[Bioperl-l] installation problem with Bio::Tools::Run::StandAloneBlastPlus module

[heyi xiao]

Thanks Chris,
I do have bioperl pre-installed but not IPC::Run. And I installed IPC::Run. StandAloneBlastPlus works fine this time. thanks a lot for the hint! 
I have a question here though. I understand that CPAN configures all the dependencies and installed them automatically. But isn’t IPC::Run a dependency of StandAloneBlastPlus according to CPAN installer? Thank you!
Heyi


--- On Fri, 4/29/11, Chris Fields <cjfields at illinois.edu> wrote:

> From: Chris Fields <cjfields at illinois.edu>
> Subject: Re: [Bioperl-l] installation problem with Bio::Tools::Run::StandAloneBlastPlus module
> To: "heyi xiao" <xiaoheyiyh at yahoo.com>
> Cc: bioperl-l at lists.open-bio.org
> Date: Friday, April 29, 2011, 9:54 AM
> IPC::Run and BioPerl are both listed
> as dependencies for BioPerl-Run; were these not installed
> via CPAN?
> 
> chris
> 
> On Apr 28, 2011, at 3:46 PM, heyi xiao wrote:
> 
> > Hi all,
> > I am trying to install bioperl module,
> Bio::Tools::Run::StandAloneBlastPlus, through CPAN. I
> updated CPAN and Module::Build before installation. But I
> got the following error message.
> > Building and testing BioPerl-1.006900 ... FAIL
> > ! Installing Bio::Root::Version failed. See
> /home/xiao/.cpanm/build.log for details.
> > ! Bailing out the installation for
> BioPerl-Run-1.006900. Retry with --prompt or --force.
> > 
> > I used --force option to install it anyway. But the
> module cann’t be loaded or used properly, with the
> following error:
> > Can't locate IPC/Run.pm in @INC..
> > 
> > Obviously there are some problem with BioPerl-Run. But
> I am not sure what that’s, and how to solve it. Any help
> would be appreicately. Thanks!
> > Heyi
> > 
> > 
> > 
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> > Bioperl-l at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/bioperl-l
> 
>