[Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released

Florent Angly florent.angly at gmail.com
Sat Apr 16 04:17:28 UTC 2011


Awesome! Thanks to everyone for the efforts they put in the new version.
Florent

On 16/04/11 01:50, Diego M. Vadell wrote:
> Thank you very much!!
>
>   -- Diego
>
> On Thursday, April 14, 2011 10:22:04 pm Hilmar Lapp wrote:
>> Yeah - awesome, congrats, that was fast!
>>
>> 	-hilmar
>>
>> On Apr 14, 2011, at 5:57 PM, Jason Stajich wrote:
>>> Excellent news Chris - thanks for the hard work!
>>>
>>> -jason
>>>
>>> On Apr 14, 2011, at 1:56 PM, Dave Messina wrote:
>>>> Thanks, Chris! This is a PumpKing Extraordinaire, everybody. Give
>>>> it up.
>>>>
>>>>
>>>> Dave
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> On Thu, Apr 14, 2011 at 22:14, Robert Buels<rmb32 at cornell.edu>
>>>>
>>>> wrote:
>>>>> Hurray!  Chris, you are tremendous.  Seriously.
>>>>>
>>>>> Rob
>>>>>
>>>>> On 04/14/2011 12:57 PM, Chris Fields wrote:
>>>>>> All,
>>>>>>
>>>>>> BioPerl 1.6.9 is now available in CPAN.  In this release:
>>>>>>
>>>>>> * Refactored Bio::Species/Bio::Tree
>>>>>> * New SeqIO modules (gbxml, msout, mbsout)
>>>>>> * Updates for perl 5.12
>>>>>> * Bio::Assembly support for SAM/BAM, Newbler, ace output
>>>>>> * Bio::DB::SeqFeature updates
>>>>>> * PAML updated to work with v. 4.4d
>>>>>> * lots of various bug fixes, around 50
>>>>>>
>>>>>> Just to note, this is the first release after I reworked the
>>>>>> Build.PL
>>>>>> system, so we will probably hit a few speed bumps along the way.
>>>>>> This is in
>>>>>> effort to simplify the process for further work this summer on
>>>>>> modularizing
>>>>>> BioPerl, but it also makes new releases much easier to make.  In
>>>>>> particular,
>>>>>> this has only been tested on Ubuntu Linux and Mac OS X (no
>>>>>> Windows testing
>>>>>> has occurred yet).    Please post if there are any problems.
>>>>>>
>>>>>> Enjoy!
>>>>>>
>>>>>> chris
>>>>>>
>>>>>>
>>>>>>
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