[Bioperl-l] Clean handling of SQLite choice when running ./Build test

Scott Cain scott at scottcain.net
Tue Apr 12 13:38:11 UTC 2011


Hi Lincoln and Chris,

I'm wondering what we should do about the SQLite option for testing
when running ./Build test.  Currently (for me at least :-) when I
select SQLite as the testing database when running perl Build.PL, the
Bio::DB::GFF tests get "dubious" (which is fairly amazing, since there
isn't a SQLite adaptor for Bio::DB::GFF), but it runs a different
number of tests that planned, thus the dubious.  My inclination would
be to not include SQLite as a testing option to avoid this problem,
otherwise I suppose the Bio::DB::GFF test could be modified to use the
memory adaptor when SQLite is the chosen testing database.

Scott


-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research




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