March 2005 Archives by thread

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Starting: Tue Mar 1 06:51:16 EST 2005
Ending: Thu Mar 31 22:44:49 EST 2005
Messages: 271

• [Bioperl-l] Proposal for bio-perl updates: ACE assembly file   Elia Stupka
  • [Bioperl-l] Proposal for bio-perl updates: ACE assembly file   Jordan Swanson
  • [Bioperl-l] Proposal for bio-perl updates: ACE assembly file   Fernan Aguero
    • [Bioperl-l] Proposal for bio-perl updates: ACE assembly file   Jordan Swanson
      • [Bioperl-l] Proposal for bio-perl updates: ACE assembly file   Elia Stupka
• [Bioperl-l] which one and how to configure(blastall)   Stefan Wächter
• [Bioperl-l] Bio::LiveSeq::Transcript query from new bioperl user   Daniel Jeffares
  • [Bioperl-l] Bio::LiveSeq::Transcript query from new bioperl user   Heikki Lehvaslaiho
• [Bioperl-l] blastall & StandAloneBlast   Matthew Laird
  • [Bioperl-l] blastall & StandAloneBlast   Elia Stupka
    • [Bioperl-l] blastall & StandAloneBlast   Matthew Laird
      • [Bioperl-l] blastall & StandAloneBlast   Elia Stupka
      • [Bioperl-l] blastall & StandAloneBlast   Matthew Laird
• [Bioperl-l] GFF question   Thiago Motta Venancio
  • [Bioperl-l] GFF question   Jason Stajich
• [Bioperl-l] gap/ambiguous character only sequences: Bio::PrimarySeq   Jon manning
  • [Bioperl-l] gap/ambiguous character only sequences: Bio::PrimarySeq   Jason Stajich
• [Bioperl-l] FYI: BioPerl port for OpenBSD   Andreas Kahari
• [Bioperl-l] Re: [Gmod-gbrowse] Parser   Jason Stajich
• [Bioperl-l] Re: [Gmod-gbrowse] Parser   Jason Stajich
• [Bioperl-l] need some help about pqs   jaiswal at iitk.ac.in
  • [Bioperl-l] need some help about pqs   Barry Moore
• [Bioperl-l] regarding bioperl project   Gowri Karthik
• [Bioperl-l] (no subject)   SG Edwards
• [Bioperl-l] Extraction from UniProt flatfile   SG Edwards
  • [Bioperl-l] Extraction from UniProt flatfile   Heikki Lehvaslaiho
    • [Bioperl-l] Extraction from UniProt flatfile   Sean Davis
• [Bioperl-l] bump in GD::SVG   Lincoln Stein
• [Bioperl-l] two colors on the same track, still not work   Lincoln Stein
• [Bioperl-l] Need help using AlignIO   Ned Young
  • [Bioperl-l] Need help using AlignIO   Jason Stajich
• [Bioperl-l] (no subject)   mail2doreen at gmx.de
  • [Bioperl-l] (no subject)   Jason Stajich
• [Bioperl-l] Request for advice and pointers on a project to help biologists d o simple formatting and analysis   Amir Karger
  • [Bioperl-l] Request for advice and pointers on a project to help biologists d o simple formatting and analysis   Stefan Kirov
    • [Bioperl-l] Request for advice and pointers on a project to help biologists d o simple formatting and analysis   Todd Harris
      • [Bioperl-l] Request for advice and pointers on a project to help biologists d o simple formatting and analysis   Rex Nelson
• [Bioperl-l] Request for advice and pointers on a project to h elp biologists d o simple formatting and analysis   Amir Karger
• [Bioperl-l] Aggressive aggregation?   Chad Matsalla
  • [Bioperl-l] Aggressive aggregation?   Jason Stajich
    • [Bioperl-l] Aggressive aggregation?   Aaron J. Mackey
  • [Bioperl-l] Aggressive aggregation?   Aaron J. Mackey
    • [Bioperl-l] Aggressive aggregation?   Chad Matsalla
      • [Bioperl-l] Aggressive aggregation?   Lincoln Stein
      • [Bioperl-l] Aggressive aggregation?   Aaron J. Mackey
  • [Bioperl-l] Aggressive aggregation?   Lincoln Stein
• [Bioperl-l] strange error after changing to RC1.5   Daniel Lang
  • [Bioperl-l] strange error after changing to RC1.5   Allen Day
    • [Bioperl-l] strange error after changing to RC1.5   Daniel Lang
      • [Bioperl-l] strange error after changing to RC1.5   Allen Day
    • [Bioperl-l] strange error after changing to RC1.5   Hilmar Lapp
      • [Bioperl-l] strange error after changing to RC1.5   Allen Day
      • [Bioperl-l] strange error after changing to RC1.5   Elia Stupka
      • [Bioperl-l] strange error after changing to RC1.5   Aaron J. Mackey
      • [Bioperl-l] strange error after changing to RC1.5   Hilmar Lapp
      • [Bioperl-l] strange error after changing to RC1.5   Brian Osborne
      • [Bioperl-l] strange error after changing to RC1.5   Hilmar Lapp
      • [Bioperl-l] strange error after changing to RC1.5   Scott Cain
      • [Bioperl-l] strange error after changing to RC1.5   Hilmar Lapp
  • [Bioperl-l] strange error after changing to RC1.5   Hilmar Lapp
• [Bioperl-l] uniprot flatfile extraction   SG Edwards
  • [Bioperl-l] uniprot flatfile extraction   Hilmar Lapp
• [Bioperl-l] Request for advice and pointers on a project to help biologists d o simple formatting and analysis   Amir Karger
  • [Bioperl-l] Request for advice and pointers on a project to help biologists d o simple formatting and analysis   Andreas Kahari
    • [Bioperl-l] Request for advice and pointers on a project to help biologists d o simple formatting and analysis   Stefan Kirov
• [Bioperl-l] PAML nssites model result object   Edward Chuong
  • [Bioperl-l] PAML nssites model result object   Jason Stajich
    • [Bioperl-l] PAML nssites model result object   Jason Stajich
      • [Bioperl-l] PAML nssites model result object   Edward Chuong
      • [Bioperl-l] PAML nssites model result object   Jason Stajich
      • [Bioperl-l] PAML nssites model result object   Edward Chuong
• [Bioperl-l] Mysql columns and Blast evalues   davila
  • [Bioperl-l] Mysql columns and Blast evalues   Stefan Kirov
• RES: [Bioperl-l] Mysql columns and Blast evalues   davila
  • RES: [Bioperl-l] Mysql columns and Blast evalues   Stefan Kirov
  • RES: [Bioperl-l] Mysql columns and Blast evalues   Aaron J. Mackey
• [Bioperl-l] stockholm AlignIO write_aln method   Albert Vilella
  • [Bioperl-l] stockholm AlignIO write_aln method   Jason Stajich
• [Bioperl-l] stockholm AlignIO write_aln method   Albert Vilella
• [Bioperl-l] hapmap.pm startingcol now 11?   Albert Vilella
  • [Bioperl-l] hapmap.pm startingcol now 11?   rich
• [Bioperl-l] Entrez Gene ASN   Stefan Kirov
  • [Bioperl-l] Entrez Gene ASN   Peter.Robinson at t-online.de
    • [Bioperl-l] Entrez Gene ASN   Stefan Kirov
  • [Bioperl-l] Entrez Gene ASN   Hilmar Lapp
    • [Bioperl-l] Entrez Gene ASN   Stefan Kirov
      • [Bioperl-l] Entrez Gene ASN   Hilmar Lapp
      • [Bioperl-l] Entrez Gene ASN   Stefan Kirov
• [Bioperl-l] Request for advice and pointers on a project to h elp biologists d o simple formatting and analysis   Amir Karger
  • [Bioperl-l] Request for advice and pointers on a project to h elp biologists d o simple formatting and analysis   Malay
    • [Bioperl-l] Re: Request for advice and pointers on a project to h elp biologists d o simple formatting and analysis   Chris Fields
  • [Bioperl-l] Request for advice and pointers on a project to help biologists do simple formatting and analysis   Catherine Letondal
• [Bioperl-l] Request for advice and pointers on a project to h elp biologists d o simple formatting and analysis   Amir Karger
• [Bioperl-l] Request for advice and pointers on a project to h elp biologists d o simple formatting and analysis   Amir Karger
  • [Bioperl-l] Request for advice and pointers on a project to h elp biologists d o simple formatting and analysis   Paulo Almeida
• RES: [Bioperl-l] Mysql columns and Blast evalues   Sucheta Tripathy
• RES: [Bioperl-l] Mysql columns and Blast evalues   hancy
  • RES: [Bioperl-l] Mysql columns and Blast evalues   Alberto Davila
• [Bioperl-l] naive question about Bio::Tools::Primer3   Ned Young
• [Bioperl-l] Living on the edg with 1.5?   Phillip San Miguel
  • [Bioperl-l] Living on the edg with 1.5?   Remo Sanges
  • [Bioperl-l] Living on the edg with 1.5?   Allen Day
  • [Bioperl-l] Living on the edg with 1.5?   Hilmar Lapp
• [Bioperl-l] PAML nssites model result object   Edward Chuong
• [Bioperl-l] 1.6 release   Richard Adams
  • [Bioperl-l] 1.6 release   Jason Stajich
    • [Bioperl-l] 1.6 release   Allen Day
• [Bioperl-l] drawing additional axes with GD::Graph   Sucheta Tripathy
• [Bioperl-l] Entrez Gene ASN parsers   Liu, Mingyi
  • [Bioperl-l] Entrez Gene ASN parsers   Stefan Kirov
• [Bioperl-l] Entrez Gene ASN parsers   Liu, Mingyi
  • [Bioperl-l] Entrez Gene ASN parsers   Hilmar Lapp
• [Bioperl-l] Entrez Gene ASN parsers   Liu, Mingyi
  • [Bioperl-l] Entrez Gene ASN parsers   Hilmar Lapp
    • [Bioperl-l] Porting Entrez Gene parser to Biojava, Biopython, Biophp, even C++   Mingyi Liu
      • [Bioperl-l] Porting Entrez Gene parser to Biojava, Biopython, Biophp, even C++   Andrew Dalke
      • [Bioperl-l] Porting Entrez Gene parser to Biojava, Biopython, Biophp, even C++   Mingyi Liu
      • [Bioperl-l] Porting Entrez Gene parser to Biojava, Biopython, Biophp, even C++   Andrew Dalke
      • [Bioperl-l] Porting Entrez Gene parser to Biojava, Biopython, Biophp, even C++   Mingyi Liu
      • [Bioperl-l] Porting Entrez Gene parser to Biojava, Biopython, Biophp, even C++   Mingyi Liu
      • [Bioperl-l] Entrez Gene parsers updated   Mingyi Liu
      • [Bioperl-l] Error reporting/Validation implemented   Mingyi Liu
      • [Bioperl-l] Error reporting/Validation implemented   Stefan Kirov
      • [Bioperl-l] Error reporting/Validation implemented   Mingyi Liu
• [Bioperl-l] Entrez Gene ASN parsers   Liu, Mingyi
  • [Bioperl-l] Entrez Gene ASN parsers   Hilmar Lapp
• [Bioperl-l] gff2genbank   mail2doreen at gmx.de
• [Bioperl-l] Getting IC & Consensus with Bio::Matrix::PSM::SiteMatrix   Edward Wijaya
  • [Bioperl-l] Getting IC & Consensus with Bio::Matrix::PSM::SiteMatrix   James Thompson
    • [Bioperl-l] Getting IC & Consensus with Bio::Matrix::PSM::SiteMatrix   Stefan Kirov
      • [Bioperl-l] Getting IC & Consensus with Bio::Matrix::PSM::SiteMatrix   Edward Wijaya
      • [Bioperl-l] Getting IC & Consensus with Bio::Matrix::PSM::SiteMatrix   Stefan Kirov
      • [Bioperl-l] Getting IC & Consensus with Bio::Matrix::PSM::SiteMatrix - The Code   Edward Wijaya
• [Bioperl-l] Full uniprot annotation extraction   SG Edwards
  • [Bioperl-l] Full uniprot annotation extraction   Brian Osborne
  • [Bioperl-l] Full uniprot annotation extraction   Hilmar Lapp
• [Bioperl-l] query   Mane, Ajay (UMR-Student)
  • [Bioperl-l] query   Andreas Kahari
  • [Bioperl-l] query   Paulo Almeida
• [Bioperl-l] query   Razi Khaja
• [Bioperl-l] Help with String::Approx   Waibhav Tembe
• [Bioperl-l] Refseq and Splice Variants   Peter J Stogios
  • [Bioperl-l] Refseq and Splice Variants   Stefan Kirov
  • [Bioperl-l] Refseq and Splice Variants   Ewan Birney
• [Bioperl-l] How to use trnascan.pm   yanfeng
• [Bioperl-l] Strange problem with Bio::Seq::LargePrimarySeq   iluminati at earthlink.net
  • [Bioperl-l] Strange problem with Bio::Seq::LargePrimarySeq   Garrett Sorensen
• [Bioperl-l] Strange problem with Bio::Seq::LargePrimarySeq]   Stefan Kirov
  • [Bioperl-l] Strange problem with Bio::Seq::LargePrimarySeq]   iluminati at earthlink.net
    • [Bioperl-l] Strange problem with Bio::Seq::LargePrimarySeq]   Jason Stajich
    • [Bioperl-l] Strange problem with Bio::Seq::LargePrimarySeq]   Stefan Kirov
      • [Bioperl-l] Strange problem with Bio::Seq::LargePrimarySeq]   iluminati at earthlink.net
      • [Bioperl-l] Strange problem with Bio::Seq::LargePrimarySeq]   Stefan Kirov
• [Bioperl-l] Xmfa2GFF   khoueiry
• [Bioperl-l] help me with "blastall call crashed:-1"   sasalacolla at libero.it
  • [Bioperl-l] help me with "blastall call crashed:-1"   Remo Sanges
• [Bioperl-l] naive question about Bio::Tools::Primer3   Chad Matsalla
• [Bioperl-l] Swissprot query - Help!   SG Edwards
  • [Bioperl-l] Swissprot query - Help!   Brian Osborne
• [Bioperl-l] cannot find path to blastall   James Gregory
  • [Bioperl-l] cannot find path to blastall   Brian Osborne
    • [Bioperl-l] cannot find path to blastall   James Gregory
      • [Bioperl-l] cannot find path to blastall   Brian Osborne
      • [Bioperl-l] cannot find path to blastall   James Gregory
      • [Bioperl-l] cannot find path to blastall   Diego Mauricio Riaño Pachón
• [Bioperl-l] bl2seq of NCBI   Mane, Ajay (UMR-Student)
• [Bioperl-l] SeqIO - masked seqs   chauser
• [Bioperl-l] help on getting annotations   zhihua li
  • [Bioperl-l] help on getting annotations   Sean Davis
  • [Bioperl-l] help on getting annotations   Sean Davis
• [Bioperl-l] cannot find path to blastall   Marc Logghe
• [Bioperl-l] SeqIO - masked seqs   Marc Logghe
  • [Bioperl-l] SeqIO - masked seqs   chauser
    • [Bioperl-l] SeqIO - masked seqs   Nathan Haigh
• [Bioperl-l] how to parse the GenPept sequence object to get the 'DBSOURCE' field   Leonardo Kenji Shikida
  • [Bioperl-l] how to parse the GenPept sequence object to get the'DBSOURCE' field   Brian Osborne
    • [Bioperl-l] how to parse the GenPept sequence object to get the'DBSOURCE' field   Hilmar Lapp
      • [Bioperl-l] how to parse the GenPept sequence object to get the'DBSOURCE' field   Brian Osborne
      • [Bioperl-l] how to parse the GenPept sequence object to get the'DBSOURCE' field   Hilmar Lapp
      • [Bioperl-l] how to parse the GenPept sequence object to get the'DBSOURCE' field   Brian Osborne
• [Bioperl-l] SeqIO - masked seqs   Marc Logghe
• [Bioperl-l] Non-implemented methods and bioperl documentation/ContigAnalysis   SRMD, Col - Underwood, Anthony
• [Bioperl-l] help me with Bio-Tools-PSort-2.0.4   sasalacolla at libero.it
  • [Bioperl-l] help me with Bio-Tools-PSort-2.0.4   Remo Sanges
• [Bioperl-l] Symlink on install   Ben Faga
  • [Bioperl-l] Symlink on install   Brian Osborne
• [Bioperl-l] Does BioPerl like mpiBlast?   Scott Lambdin
  • [Bioperl-l] Does BioPerl like mpiBlast?   Jason Stajich
• [Bioperl-l] Loading taxonomy data into BioSQL   SG Edwards
  • [Bioperl-l] Loading taxonomy data into BioSQL   Brian Osborne
    • [Bioperl-l] Loading taxonomy data into BioSQL   SG Edwards
      • [Bioperl-l] Loading taxonomy data into BioSQL   SG Edwards
      • [Bioperl-l] Loading taxonomy data into BioSQL   Hilmar Lapp
      • [Bioperl-l] Loading taxonomy data into BioSQL   SG Edwards
      • [Bioperl-l] Loading taxonomy data into BioSQL   Hilmar Lapp
• [Bioperl-l] How to express 'histogram' data in GFF3   Matthew Vaughn
  • [Bioperl-l] How to express 'histogram' data in GFF3   Scott Cain
• [Bioperl-l] Yet Another Perl Conference, North America, 2005 Registration now open   glim at mycybernet.net
• [Bioperl-l] cigarline conversion   Johnson, Nathan
  • [Bioperl-l] cigarline conversion   Jason Stajich
• [Bioperl-l] How to use proxy in Bioperl?   zhoujie at fudan.edu.cn
• [Bioperl-l] How to use proxy in Bioperl?   zhoujie at fudan.edu.cn
• [Bioperl-l] How to use proxy in Bioperl?   Marc Logghe
• [Bioperl-l] How to use proxy in Bioperl?   Marc Logghe
• [Bioperl-l] Easy switching from wwwBlast to QBlast   Madeleine Lemieux
• [Bioperl-l] [How to add features in genbank flat file]   Sebastien Moretti
  • [Bioperl-l] [How to add features in genbank flat file]   Jason Stajich
• [Bioperl-l] Hierarchical location parsing   Mark Hoebeke
  • [Bioperl-l] Hierarchical location parsing   Jason Stajich
    • [Bioperl-l] Hierarchical location parsing   Mark Hoebeke
  • [Bioperl-l] Hierarchical location parsing   Brian Osborne
• [Bioperl-l] Assistance with a BioPerl/Perl project   Colin Erdman
  • [Bioperl-l] Assistance with a BioPerl/Perl project   Sean Davis
    • [Bioperl-l] Assistance with a BioPerl/Perl project   Colin Erdman
      • [Bioperl-l] Assistance with a BioPerl/Perl project   Sean Davis
• [Bioperl-l] Help with hmmpfam   Kary Ann Del Carmen Soriano Ocana
  • [Bioperl-l] Help with hmmpfam   Jason Stajich
  • [Bioperl-l] Help with hmmpfam   Brian Osborne
• [Bioperl-l] Fw: [Gene-announce] Announcing gene2xml to facilitate conversion of Entrez Gene ASN.1 to XML and more...   Sean Davis
• [Bioperl-l] Question about accessing tags in Bio::SeqFeature::Generic   iluminati at earthlink.net
  • [Bioperl-l] Question about accessing tags in Bio::SeqFeature::Generic   Hilmar Lapp
• [Bioperl-l] Question about accessing tags inBio::SeqFeature::Generic   Marc Logghe
• [Bioperl-l] Re: How to express 'histogram' data in GFF3   Matthew Vaughn
• [Bioperl-l] Hierarchical location parsing   Mark Hoebeke
• [Bioperl-l] Hierarchical location parsing   Brian Osborne
  • [Bioperl-l] Hierarchical location parsing   Mark Hoebeke
    • [Bioperl-l] Hierarchical location parsing   Brian Osborne
      • [Bioperl-l] Hierarchical location parsing   Hoebeke Mark
• [Bioperl-l] Hidden Markov Model in Bioperl?   Yee Man Chan
  • [Bioperl-l] Hidden Markov Model in Bioperl?   Hilmar Lapp
    • [Bioperl-l] Hidden Markov Model in Bioperl?   Yee Man Chan
  • [Bioperl-l] Hidden Markov Model in Bioperl?   Aaron J. Mackey
    • [Bioperl-l] Hidden Markov Model in Bioperl?   Yee Man Chan
• [Bioperl-l] Question about accessing tags in Bio::SeqFeature::Generic   Hilmar Lapp
• [Bioperl-l] drawing correct orientations of subject strands   Sucheta Tripathy
  • [Bioperl-l] drawing correct orientations of subject strands   Rob Edwards
• [Bioperl-l] A question about flatting taxonomy database   zhoujie at fudan.edu.cn
  • [Bioperl-l] A question about flatting taxonomy database   Jason Stajich
• [Bioperl-l] A question about flatting taxonomy database   zhoujie at fudan.edu.cn
• [Bioperl-l] BLASTP   Minyi
  • [Bioperl-l] BLASTP   Paulo Almeida
    • [Bioperl-l] BLASTP   Brian Osborne
• [Bioperl-l] Re:BLASTP   Juan Carlos Sanchez Ferrero
• [Bioperl-l] Primer3.pm   Mike Muratet
  • [Bioperl-l] Primer3.pm   Mike Muratet
    • [Bioperl-l] Primer3.pm   Rob Edwards
• [Bioperl-l] More fun with primer3   Mike Muratet
• [Bioperl-l] Possible memory leak in Bio::SeqFeature::Gene::GeneStructure?   Stefan Kirov
  • [Bioperl-l] Possible memory leak in Bio::SeqFeature::Gene::GeneStructure?   Hilmar Lapp
    • [Bioperl-l] Possible memory leak in Bio::SeqFeature::Gene::GeneStructure?   Stefan Kirov
    • [Bioperl-l] Possible memory leak in Bio::SeqFeature::Gene::GeneStructure?   Stefan Kirov
• [Bioperl-l] Possible memory leak in Bio::SeqFeature::Gene::GeneStructure?   Stefan Kirov
  • [Bioperl-l] Possible memory leak in Bio::SeqFeature::Gene::GeneStructure?   Jason Stajich
    • [Bioperl-l] Possible memory leak in Bio::SeqFeature::Gene::GeneStructure?   Stefan Kirov
• [Bioperl-l] BLASTP   Minyi
• [Bioperl-l] $id && $self->display($id)   Sally Li
  • [Bioperl-l] $id && $self->display($id)   Mike Schuh
  • [Bioperl-l] $id && $self->display($id)   Stefan Kirov
• [Bioperl-l] Turning the tree into bifurcating one   Babenko, Vladimir (NIH/NLM/NCBI)
• [Bioperl-l] BLASTP   Madeleine Lemieux
• [Bioperl-l] BL2SEQ   Mane, Ajay (UMR-Student)
• [Bioperl-l] EntrezGene ASN parser   Stefan Kirov
• [Bioperl-l] Retrieving hits in order in SeqIO   Adam Woolfe
• [Bioperl-l] bioperl 1.5.0 on OS X   Koen van der Drift
• [Bioperl-l] Retrieving hits in order in SeqIO   Adam Woolfe
• [Bioperl-l] BL2SEQ   Mane, Ajay (UMR-Student)
  • [Bioperl-l] BL2SEQ   Sean Davis
    • [Bioperl-l] BL2SEQ   Barry Moore
• [Bioperl-l] patch to FeatureIO.pm for tied interface   Cook, Malcolm
• [Bioperl-l] pubmed   Qunfeng
• [Bioperl-l] Help with taxonomy db   zhoujie at fudan.edu.cn

Last message date: Thu Mar 31 22:44:49 EST 2005
Archived on: Thu Mar 31 23:30:13 EST 2005

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• More info on this list...