March 2005 Archives by author

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Starting: Tue Mar 1 06:51:16 EST 2005
Ending: Thu Mar 31 22:44:49 EST 2005
Messages: 271

[Bioperl-l] which one and how to configure(blastall) Stefan Wächter
[Bioperl-l] cannot find path to blastall Diego Mauricio Riaño Pachón
[Bioperl-l] 1.6 release Richard Adams
[Bioperl-l] Proposal for bio-perl updates: ACE assembly file Fernan Aguero
[Bioperl-l] Request for advice and pointers on a project to h elp biologists d o simple formatting and analysis Paulo Almeida
[Bioperl-l] query Paulo Almeida
[Bioperl-l] BLASTP Paulo Almeida
[Bioperl-l] Turning the tree into bifurcating one Babenko, Vladimir (NIH/NLM/NCBI)
[Bioperl-l] Refseq and Splice Variants Ewan Birney
[Bioperl-l] strange error after changing to RC1.5 Scott Cain
[Bioperl-l] How to express 'histogram' data in GFF3 Scott Cain
[Bioperl-l] Hidden Markov Model in Bioperl? Yee Man Chan
[Bioperl-l] Hidden Markov Model in Bioperl? Yee Man Chan
[Bioperl-l] Hidden Markov Model in Bioperl? Yee Man Chan
[Bioperl-l] PAML nssites model result object Edward Chuong
[Bioperl-l] PAML nssites model result object Edward Chuong
[Bioperl-l] PAML nssites model result object Edward Chuong
[Bioperl-l] PAML nssites model result object Edward Chuong
[Bioperl-l] patch to FeatureIO.pm for tied interface Cook, Malcolm
[Bioperl-l] Porting Entrez Gene parser to Biojava, Biopython, Biophp, even C++ Andrew Dalke
[Bioperl-l] Porting Entrez Gene parser to Biojava, Biopython, Biophp, even C++ Andrew Dalke
RES: [Bioperl-l] Mysql columns and Blast evalues Alberto Davila
[Bioperl-l] Extraction from UniProt flatfile Sean Davis
[Bioperl-l] help on getting annotations Sean Davis
[Bioperl-l] help on getting annotations Sean Davis
[Bioperl-l] Assistance with a BioPerl/Perl project Sean Davis
[Bioperl-l] Assistance with a BioPerl/Perl project Sean Davis
[Bioperl-l] Fw: [Gene-announce] Announcing gene2xml to facilitate conversion of Entrez Gene ASN.1 to XML and more... Sean Davis
[Bioperl-l] BL2SEQ Sean Davis
[Bioperl-l] Living on the edg with 1.5? Allen Day
[Bioperl-l] strange error after changing to RC1.5 Allen Day
[Bioperl-l] strange error after changing to RC1.5 Allen Day
[Bioperl-l] strange error after changing to RC1.5 Allen Day
[Bioperl-l] 1.6 release Allen Day
[Bioperl-l] bioperl 1.5.0 on OS X Koen van der Drift
[Bioperl-l] drawing correct orientations of subject strands Rob Edwards
[Bioperl-l] Primer3.pm Rob Edwards
[Bioperl-l] (no subject) SG Edwards
[Bioperl-l] Extraction from UniProt flatfile SG Edwards
[Bioperl-l] uniprot flatfile extraction SG Edwards
[Bioperl-l] Full uniprot annotation extraction SG Edwards
[Bioperl-l] Swissprot query - Help! SG Edwards
[Bioperl-l] Loading taxonomy data into BioSQL SG Edwards
[Bioperl-l] Loading taxonomy data into BioSQL SG Edwards
[Bioperl-l] Loading taxonomy data into BioSQL SG Edwards
[Bioperl-l] Loading taxonomy data into BioSQL SG Edwards
[Bioperl-l] Assistance with a BioPerl/Perl project Colin Erdman
[Bioperl-l] Assistance with a BioPerl/Perl project Colin Erdman
[Bioperl-l] Symlink on install Ben Faga
[Bioperl-l] Re:BLASTP Juan Carlos Sanchez Ferrero
[Bioperl-l] Re: Request for advice and pointers on a project to h elp biologists d o simple formatting and analysis Chris Fields
[Bioperl-l] cannot find path to blastall James Gregory
[Bioperl-l] cannot find path to blastall James Gregory
[Bioperl-l] cannot find path to blastall James Gregory
[Bioperl-l] SeqIO - masked seqs Nathan Haigh
[Bioperl-l] Request for advice and pointers on a project to help biologists d o simple formatting and analysis Todd Harris
[Bioperl-l] Hierarchical location parsing Mark Hoebeke
[Bioperl-l] Hierarchical location parsing Mark Hoebeke
[Bioperl-l] Hierarchical location parsing Mark Hoebeke
[Bioperl-l] Hierarchical location parsing Mark Hoebeke
[Bioperl-l] Bio::LiveSeq::Transcript query from new bioperl user Daniel Jeffares
[Bioperl-l] cigarline conversion Johnson, Nathan
[Bioperl-l] FYI: BioPerl port for OpenBSD Andreas Kahari
[Bioperl-l] Request for advice and pointers on a project to help biologists d o simple formatting and analysis Andreas Kahari
[Bioperl-l] query Andreas Kahari
[Bioperl-l] Request for advice and pointers on a project to help biologists d o simple formatting and analysis Amir Karger
[Bioperl-l] Request for advice and pointers on a project to h elp biologists d o simple formatting and analysis Amir Karger
[Bioperl-l] Request for advice and pointers on a project to help biologists d o simple formatting and analysis Amir Karger
[Bioperl-l] Request for advice and pointers on a project to h elp biologists d o simple formatting and analysis Amir Karger
[Bioperl-l] Request for advice and pointers on a project to h elp biologists d o simple formatting and analysis Amir Karger
[Bioperl-l] Request for advice and pointers on a project to h elp biologists d o simple formatting and analysis Amir Karger
[Bioperl-l] regarding bioperl project Gowri Karthik
[Bioperl-l] query Razi Khaja
[Bioperl-l] Request for advice and pointers on a project to help biologists d o simple formatting and analysis Stefan Kirov
[Bioperl-l] Mysql columns and Blast evalues Stefan Kirov
RES: [Bioperl-l] Mysql columns and Blast evalues Stefan Kirov
[Bioperl-l] Entrez Gene ASN Stefan Kirov
[Bioperl-l] Request for advice and pointers on a project to help biologists d o simple formatting and analysis Stefan Kirov
[Bioperl-l] Entrez Gene ASN Stefan Kirov
[Bioperl-l] Entrez Gene ASN Stefan Kirov
[Bioperl-l] Entrez Gene ASN parsers Stefan Kirov
[Bioperl-l] Getting IC & Consensus with Bio::Matrix::PSM::SiteMatrix Stefan Kirov
[Bioperl-l] Getting IC & Consensus with Bio::Matrix::PSM::SiteMatrix Stefan Kirov
[Bioperl-l] Entrez Gene ASN Stefan Kirov
[Bioperl-l] Refseq and Splice Variants Stefan Kirov
[Bioperl-l] Strange problem with Bio::Seq::LargePrimarySeq] Stefan Kirov
[Bioperl-l] Strange problem with Bio::Seq::LargePrimarySeq] Stefan Kirov
[Bioperl-l] Strange problem with Bio::Seq::LargePrimarySeq] Stefan Kirov
[Bioperl-l] Error reporting/Validation implemented Stefan Kirov
[Bioperl-l] Possible memory leak in Bio::SeqFeature::Gene::GeneStructure? Stefan Kirov
[Bioperl-l] Possible memory leak in Bio::SeqFeature::Gene::GeneStructure? Stefan Kirov
[Bioperl-l] Possible memory leak in Bio::SeqFeature::Gene::GeneStructure? Stefan Kirov
[Bioperl-l] Possible memory leak in Bio::SeqFeature::Gene::GeneStructure? Stefan Kirov
[Bioperl-l] Possible memory leak in Bio::SeqFeature::Gene::GeneStructure? Stefan Kirov
[Bioperl-l] EntrezGene ASN parser Stefan Kirov
[Bioperl-l] $id && $self->display($id) Stefan Kirov
[Bioperl-l] blastall & StandAloneBlast Matthew Laird
[Bioperl-l] blastall & StandAloneBlast Matthew Laird
[Bioperl-l] blastall & StandAloneBlast Matthew Laird
[Bioperl-l] Does BioPerl like mpiBlast? Scott Lambdin
[Bioperl-l] strange error after changing to RC1.5 Daniel Lang
[Bioperl-l] strange error after changing to RC1.5 Daniel Lang
[Bioperl-l] strange error after changing to RC1.5 Hilmar Lapp
[Bioperl-l] Living on the edg with 1.5? Hilmar Lapp
[Bioperl-l] Entrez Gene ASN Hilmar Lapp
[Bioperl-l] uniprot flatfile extraction Hilmar Lapp
[Bioperl-l] strange error after changing to RC1.5 Hilmar Lapp
[Bioperl-l] Entrez Gene ASN parsers Hilmar Lapp
[Bioperl-l] Entrez Gene ASN Hilmar Lapp
[Bioperl-l] strange error after changing to RC1.5 Hilmar Lapp
[Bioperl-l] strange error after changing to RC1.5 Hilmar Lapp
[Bioperl-l] Entrez Gene ASN parsers Hilmar Lapp
[Bioperl-l] Entrez Gene ASN parsers Hilmar Lapp
[Bioperl-l] strange error after changing to RC1.5 Hilmar Lapp
[Bioperl-l] Full uniprot annotation extraction Hilmar Lapp
[Bioperl-l] how to parse the GenPept sequence object to get the'DBSOURCE' field Hilmar Lapp
[Bioperl-l] Loading taxonomy data into BioSQL Hilmar Lapp
[Bioperl-l] how to parse the GenPept sequence object to get the'DBSOURCE' field Hilmar Lapp
[Bioperl-l] Loading taxonomy data into BioSQL Hilmar Lapp
[Bioperl-l] Question about accessing tags in Bio::SeqFeature::Generic Hilmar Lapp
[Bioperl-l] Question about accessing tags in Bio::SeqFeature::Generic Hilmar Lapp
[Bioperl-l] Hidden Markov Model in Bioperl? Hilmar Lapp
[Bioperl-l] Possible memory leak in Bio::SeqFeature::Gene::GeneStructure? Hilmar Lapp
[Bioperl-l] Bio::LiveSeq::Transcript query from new bioperl user Heikki Lehvaslaiho
[Bioperl-l] Extraction from UniProt flatfile Heikki Lehvaslaiho
[Bioperl-l] Easy switching from wwwBlast to QBlast Madeleine Lemieux
[Bioperl-l] BLASTP Madeleine Lemieux
[Bioperl-l] Request for advice and pointers on a project to help biologists do simple formatting and analysis Catherine Letondal
[Bioperl-l] $id && $self->display($id) Sally Li
[Bioperl-l] Entrez Gene ASN parsers Liu, Mingyi
[Bioperl-l] Entrez Gene ASN parsers Liu, Mingyi
[Bioperl-l] Entrez Gene ASN parsers Liu, Mingyi
[Bioperl-l] Entrez Gene ASN parsers Liu, Mingyi
[Bioperl-l] Porting Entrez Gene parser to Biojava, Biopython, Biophp, even C++ Mingyi Liu
[Bioperl-l] Porting Entrez Gene parser to Biojava, Biopython, Biophp, even C++ Mingyi Liu
[Bioperl-l] Entrez Gene parsers updated Mingyi Liu
[Bioperl-l] Porting Entrez Gene parser to Biojava, Biopython, Biophp, even C++ Mingyi Liu
[Bioperl-l] Porting Entrez Gene parser to Biojava, Biopython, Biophp, even C++ Mingyi Liu
[Bioperl-l] Error reporting/Validation implemented Mingyi Liu
[Bioperl-l] Error reporting/Validation implemented Mingyi Liu
[Bioperl-l] cannot find path to blastall Marc Logghe
[Bioperl-l] SeqIO - masked seqs Marc Logghe
[Bioperl-l] SeqIO - masked seqs Marc Logghe
[Bioperl-l] How to use proxy in Bioperl? Marc Logghe
[Bioperl-l] How to use proxy in Bioperl? Marc Logghe
[Bioperl-l] Question about accessing tags inBio::SeqFeature::Generic Marc Logghe
[Bioperl-l] Aggressive aggregation? Aaron J. Mackey
[Bioperl-l] Aggressive aggregation? Aaron J. Mackey
RES: [Bioperl-l] Mysql columns and Blast evalues Aaron J. Mackey
[Bioperl-l] strange error after changing to RC1.5 Aaron J. Mackey
[Bioperl-l] Aggressive aggregation? Aaron J. Mackey
[Bioperl-l] Hidden Markov Model in Bioperl? Aaron J. Mackey
[Bioperl-l] Request for advice and pointers on a project to h elp biologists d o simple formatting and analysis Malay
[Bioperl-l] query Mane, Ajay (UMR-Student)
[Bioperl-l] bl2seq of NCBI Mane, Ajay (UMR-Student)
[Bioperl-l] BL2SEQ Mane, Ajay (UMR-Student)
[Bioperl-l] BL2SEQ Mane, Ajay (UMR-Student)
[Bioperl-l] Hierarchical location parsing Hoebeke Mark
[Bioperl-l] Aggressive aggregation? Chad Matsalla
[Bioperl-l] Aggressive aggregation? Chad Matsalla
[Bioperl-l] naive question about Bio::Tools::Primer3 Chad Matsalla
[Bioperl-l] Living on the edg with 1.5? Phillip San Miguel
[Bioperl-l] BLASTP Minyi
[Bioperl-l] BLASTP Minyi
[Bioperl-l] need some help about pqs Barry Moore
[Bioperl-l] BL2SEQ Barry Moore
[Bioperl-l] [How to add features in genbank flat file] Sebastien Moretti
[Bioperl-l] Primer3.pm Mike Muratet
[Bioperl-l] Primer3.pm Mike Muratet
[Bioperl-l] More fun with primer3 Mike Muratet
[Bioperl-l] Request for advice and pointers on a project to help biologists d o simple formatting and analysis Rex Nelson
[Bioperl-l] Help with hmmpfam Kary Ann Del Carmen Soriano Ocana
[Bioperl-l] strange error after changing to RC1.5 Brian Osborne
[Bioperl-l] Full uniprot annotation extraction Brian Osborne
[Bioperl-l] cannot find path to blastall Brian Osborne
[Bioperl-l] Swissprot query - Help! Brian Osborne
[Bioperl-l] cannot find path to blastall Brian Osborne
[Bioperl-l] how to parse the GenPept sequence object to get the'DBSOURCE' field Brian Osborne
[Bioperl-l] how to parse the GenPept sequence object to get the'DBSOURCE' field Brian Osborne
[Bioperl-l] Loading taxonomy data into BioSQL Brian Osborne
[Bioperl-l] how to parse the GenPept sequence object to get the'DBSOURCE' field Brian Osborne
[Bioperl-l] Symlink on install Brian Osborne
[Bioperl-l] Hierarchical location parsing Brian Osborne
[Bioperl-l] Help with hmmpfam Brian Osborne
[Bioperl-l] Hierarchical location parsing Brian Osborne
[Bioperl-l] Hierarchical location parsing Brian Osborne
[Bioperl-l] BLASTP Brian Osborne
[Bioperl-l] Entrez Gene ASN Peter.Robinson at t-online.de
[Bioperl-l] pubmed Qunfeng
[Bioperl-l] Non-implemented methods and bioperl documentation/ContigAnalysis SRMD, Col - Underwood, Anthony
[Bioperl-l] Living on the edg with 1.5? Remo Sanges
[Bioperl-l] help me with "blastall call crashed:-1" Remo Sanges
[Bioperl-l] help me with Bio-Tools-PSort-2.0.4 Remo Sanges
[Bioperl-l] $id && $self->display($id) Mike Schuh
[Bioperl-l] how to parse the GenPept sequence object to get the 'DBSOURCE' field Leonardo Kenji Shikida
[Bioperl-l] Strange problem with Bio::Seq::LargePrimarySeq Garrett Sorensen
[Bioperl-l] Re: [Gmod-gbrowse] Parser Jason Stajich
[Bioperl-l] Re: [Gmod-gbrowse] Parser Jason Stajich
[Bioperl-l] gap/ambiguous character only sequences: Bio::PrimarySeq Jason Stajich
[Bioperl-l] GFF question Jason Stajich
[Bioperl-l] Need help using AlignIO Jason Stajich
[Bioperl-l] (no subject) Jason Stajich
[Bioperl-l] Aggressive aggregation? Jason Stajich
[Bioperl-l] PAML nssites model result object Jason Stajich
[Bioperl-l] PAML nssites model result object Jason Stajich
[Bioperl-l] stockholm AlignIO write_aln method Jason Stajich
[Bioperl-l] PAML nssites model result object Jason Stajich
[Bioperl-l] 1.6 release Jason Stajich
[Bioperl-l] Strange problem with Bio::Seq::LargePrimarySeq] Jason Stajich
[Bioperl-l] Help with hmmpfam Jason Stajich
[Bioperl-l] cigarline conversion Jason Stajich
[Bioperl-l] [How to add features in genbank flat file] Jason Stajich
[Bioperl-l] Does BioPerl like mpiBlast? Jason Stajich
[Bioperl-l] Hierarchical location parsing Jason Stajich
[Bioperl-l] A question about flatting taxonomy database Jason Stajich
[Bioperl-l] Possible memory leak in Bio::SeqFeature::Gene::GeneStructure? Jason Stajich
[Bioperl-l] bump in GD::SVG Lincoln Stein
[Bioperl-l] two colors on the same track, still not work Lincoln Stein
[Bioperl-l] Aggressive aggregation? Lincoln Stein
[Bioperl-l] Aggressive aggregation? Lincoln Stein
[Bioperl-l] Refseq and Splice Variants Peter J Stogios
[Bioperl-l] Proposal for bio-perl updates: ACE assembly file Elia Stupka
[Bioperl-l] blastall & StandAloneBlast Elia Stupka
[Bioperl-l] blastall & StandAloneBlast Elia Stupka
[Bioperl-l] Proposal for bio-perl updates: ACE assembly file Elia Stupka
[Bioperl-l] strange error after changing to RC1.5 Elia Stupka
[Bioperl-l] Proposal for bio-perl updates: ACE assembly file Jordan Swanson
[Bioperl-l] Proposal for bio-perl updates: ACE assembly file Jordan Swanson
[Bioperl-l] Help with String::Approx Waibhav Tembe
[Bioperl-l] Getting IC & Consensus with Bio::Matrix::PSM::SiteMatrix James Thompson
RES: [Bioperl-l] Mysql columns and Blast evalues Sucheta Tripathy
[Bioperl-l] drawing additional axes with GD::Graph Sucheta Tripathy
[Bioperl-l] drawing correct orientations of subject strands Sucheta Tripathy
[Bioperl-l] How to express 'histogram' data in GFF3 Matthew Vaughn
[Bioperl-l] Re: How to express 'histogram' data in GFF3 Matthew Vaughn
[Bioperl-l] GFF question Thiago Motta Venancio
[Bioperl-l] stockholm AlignIO write_aln method Albert Vilella
[Bioperl-l] stockholm AlignIO write_aln method Albert Vilella
[Bioperl-l] hapmap.pm startingcol now 11? Albert Vilella
[Bioperl-l] Getting IC & Consensus with Bio::Matrix::PSM::SiteMatrix Edward Wijaya
[Bioperl-l] Getting IC & Consensus with Bio::Matrix::PSM::SiteMatrix Edward Wijaya
[Bioperl-l] Getting IC & Consensus with Bio::Matrix::PSM::SiteMatrix - The Code Edward Wijaya
[Bioperl-l] Retrieving hits in order in SeqIO Adam Woolfe
[Bioperl-l] Retrieving hits in order in SeqIO Adam Woolfe
[Bioperl-l] Need help using AlignIO Ned Young
[Bioperl-l] naive question about Bio::Tools::Primer3 Ned Young
[Bioperl-l] SeqIO - masked seqs chauser
[Bioperl-l] SeqIO - masked seqs chauser
[Bioperl-l] Mysql columns and Blast evalues davila
RES: [Bioperl-l] Mysql columns and Blast evalues davila
[Bioperl-l] Yet Another Perl Conference, North America, 2005 Registration now open glim at mycybernet.net
RES: [Bioperl-l] Mysql columns and Blast evalues hancy
[Bioperl-l] Strange problem with Bio::Seq::LargePrimarySeq iluminati at earthlink.net
[Bioperl-l] Strange problem with Bio::Seq::LargePrimarySeq] iluminati at earthlink.net
[Bioperl-l] Strange problem with Bio::Seq::LargePrimarySeq] iluminati at earthlink.net
[Bioperl-l] Question about accessing tags in Bio::SeqFeature::Generic iluminati at earthlink.net
[Bioperl-l] need some help about pqs jaiswal at iitk.ac.in
[Bioperl-l] Xmfa2GFF khoueiry
[Bioperl-l] help on getting annotations zhihua li
[Bioperl-l] (no subject) mail2doreen at gmx.de
[Bioperl-l] gff2genbank mail2doreen at gmx.de
[Bioperl-l] gap/ambiguous character only sequences: Bio::PrimarySeq Jon manning
[Bioperl-l] hapmap.pm startingcol now 11? rich
[Bioperl-l] help me with "blastall call crashed:-1" sasalacolla at libero.it
[Bioperl-l] help me with Bio-Tools-PSort-2.0.4 sasalacolla at libero.it
[Bioperl-l] How to use trnascan.pm yanfeng
[Bioperl-l] How to use proxy in Bioperl? zhoujie at fudan.edu.cn
[Bioperl-l] How to use proxy in Bioperl? zhoujie at fudan.edu.cn
[Bioperl-l] A question about flatting taxonomy database zhoujie at fudan.edu.cn
[Bioperl-l] A question about flatting taxonomy database zhoujie at fudan.edu.cn
[Bioperl-l] Help with taxonomy db zhoujie at fudan.edu.cn

Last message date: Thu Mar 31 22:44:49 EST 2005
Archived on: Thu Mar 31 23:30:13 EST 2005

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