[Bioperl-l] A question about flatting taxonomy database

Jason Stajich jason.stajich at duke.edu
Sun Mar 27 17:58:16 EST 2005


Can you show the command line argument that you passing in? You need to tell 
the script where to find these files.

-jason
-- 
Jason Stajich
jason.stajich at duke.edu
http://www.duke.edu/~jes12/


Quoting zhoujie at fudan.edu.cn:

> Hi all,
> 
> When I'm using "bp_local_taxonomydb_query.pl" to build a local 
> taxonomy database and query it, I always get a exception saying:"no 
> such file or directory ***, STACK ***", it seems that the nodes file, 
> id2names and names2id files are already created, but how does the 
> error MSG arise? I have already installed the BerkeleyDB module by 
> ppm. Is there anything else that I need to do?
> 
> Thanks very much for you help.
> 
> J Z
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