[Bioperl-l] Getting IC & Consensus with Bio::Matrix::PSM::SiteMatrix - The Code

[Edward Wijaya]

On Mon, 14 Mar 2005 22:47:21 +0800, Stefan Kirov <skirov at utk.edu> wrote:


>>
> Sure, that would be great. Just send it and I will optimize it if I can  
> and put it in. But maybe it should go to Bio::Tools... Any thoughts from  
> anyone else?

Stef,

Sorry for the delay. Attached is the code that compute PWM and IC,
given an array of strings.

Hope it maybe useful.

-- 
Edward WIJAYA
Singapore
-------------- next part --------------
A non-text attachment was scrubbed...
Name: compute_ic_pwm.pl
Type: application/octet-stream
Size: 7075 bytes
Desc: not available
Url : http://portal.open-bio.org/pipermail/bioperl-l/attachments/20050317/de22092c/compute_ic_pwm.obj