[Bioperl-l] need some help about pqs
jaiswal at iitk.ac.in
jaiswal at iitk.ac.in
Mon Mar 7 02:00:51 EST 2005
Dear sir,
Im student of Bioinformatics
,sir im sending u ,a problem which im facing at this
time , in PQS, it is attached with this mail,
the problem is ..
1 . i have 6000 proteins which i selected for my research ( see attachment
as list_id ), in first case i run it on pqs page of pdb id ,which give me
out put in 2. for mate & then on going to 3ed step it will give me
result in .mol file , which was i needed .
It is all correct , but it is good for 100 or 200 proteins , it can be
done manually , but for more than 6000 proteins it is ,tedious job , so ,
can u help me to do this job by any other method other than manually , or
is their any script for downloading all these files.
waiting for reply ..
thanks..
----------------------------------------------------
Ashish Kumar Jaiswal
MScBioinformatics
c/o Dr. Balaji Prakash
Structural Biology Lab,
Department of Biological Sciences
and Bioengineering,
Indian Institute of Technology, Kanpur,
UP-208016, INDIA
Ph: +91-512-2594024
FAX: +91-512-2594010
Email: jaiswal at iitk.ac.in
----------------------------------------------------
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12AS
153L
16PK
16VP
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1T15
1T16
1T1D
1T1G
1T1J
1T2A
1T2D
1T2L
1T2W
1T33
1T35
1T3B
1T3C
1T3D
1T3E
1T3I
1T3Q
1T3Q
1T3Q
1T3T
1T3U
1T3W
1T43
1T46
1T47
1T4B
1T4G
1T4H
1T4O
1T4W
1T56
1T57
1T5B
1T5H
1T5I
1T5J
1T5L
1T5O
1T5R
1T5Y
1T61
1T61
1T62
1T64
1T6A
1T6C
1T6E
1T6G
1T6G
1T6J
1T6L
1T6S
1T6T
1T6U
1T70
1T71
1T72
1T73
1T77
1T79
1T7F
1T7M
1T7R
1T7V
1T8P
1T8Q
1T8T
1T92
1T94
1T95
1T9B
1T9F
1T9H
1T9K
1TA0
1TA8
1TAZ
1TBF
1TBM
1TBR
1TBR
1TC1
1TC5
1TD4
1TD5
1TD6
1TDH
1TDJ
1TDQ
1TDQ
1TE2
1TE5
1TE6
1TED
1TEL
1TEV
1TEX
1TF0
1TF1
1TF4
1TF5
1TF7
1TFE
1TFF
1TFR
1TFU
1TFX
1TFZ
1TG8
1TGS
1TGZ
1TH0
1TH1
1TH1
1TH8
1TH8
1THF
1THM
1THQ
1THT
1THX
1TIA
1TIB
1TID
1TID
1TIE
1TII
1TIQ
1TIS
1TJ7
1TJC
1TJG
1TJG
1TJL
1TJN
1TJO
1TJV
1TJY
1TK4
1TK9
1TKE
1TKI
1TKS
1TL2
1TL9
1TLJ
1TLQ
1TLT
1TLU
1TLY
1TM0
1TM8
1TME
1TME
1TME
1TMK
1TML
1TMO
1TMY
1TN3
1TN6
1TN6
1TNR
1TNR
1TO0
1TO3
1TO6
1TO9
1TOA
1TOC
1TOC
1TOI
1TOL
1TON
1TP6
1TQ4
1TQ8
1TQG
1TQH
1TQI
1TQN
1TQX
1TQY
1TQY
1TR0
1TR9
1TRB
1TRE
1TRK
1TS9
1TSJ
1TT5
1TT5
1TT7
1TT8
1TU1
1TU3
1TU7
1TU9
1TUA
1TUE
1TUE
1TUH
1TUL
1TUV
1TUW
1TVD
1TVF
1TVG
1TVL
1TW3
1TW4
1TW6
1TW9
1TWD
1TWF
1TWF
1TWF
1TWF
1TWF
1TWF
1TWF
1TWF
1TWI
1TWL
1TWU
1TWY
1TX2
1TX4
1TX4
1TXD
1TXG
1TXJ
1TXK
1TXN
1TXO
1TXU
1TY0
1TY4
1TY9
1TYF
1TYG
1TYV
1TYY
1TZ0
1TZ9
1TZA
1TZF
1TZJ
1TZL
1TZP
1TZY
1TZY
1TZY
1TZY
1TZZ
1U00
1U02
1U04
1U08
1U0J
1U0K
1U0M
1U0S
1U0V
1U11
1U14
1U1I
1U1J
1U1Z
1U24
1U2C
1U2K
1U2M
1U2X
1U2Z
1U3D
1U3Y
1U4G
1U4J
1U4N
1U59
1U5H
1U5K
1U5P
1U5R
1U5U
1U60
1U61
1U69
1U6D
1U6G
1U6G
1U6G
1U6L
1U6M
1U79
1U7B
1U7G
1U7I
1U7K
1U7L
1U7N
1U7P
1U83
1U8S
1U8V
1U8W
1U8X
1U8Z
1U94
1U9A
1U9C
1U9D
1U9J
1U9K
1UA2
1UAC
1UAC
1UAC
1UAD
1UAI
1UAL
1UAN
1UAR
1UAS
1UAX
1UAY
1UAZ
1UB0
1UB2
1UB3
1UB4
1UB7
1UB9
1UBK
1UBK
1UBY
1UC2
1UC8
1UCT
1UCY
1UCY
1UCY
1UD0
1UD2
1UD9
1UDC
1UDD
1UDH
1UDS
1UDX
1UDZ
1UE5
1UE8
1UEA
1UEA
1UEB
1UED
1UEH
1UES
1UF2
1UF2
1UF2
1UF3
1UF5
1UF9
1UFA
1UFB
1UFK
1UFO
1UFR
1UFY
1UG6
1UGM
1UGN
1UGP
1UGP
1UGX
1UH5
1UHN
1UHV
1UI0
1UI5
1UIK
1UIR
1UIS
1UIU
1UIY
1UIZ
1UJ2
1UJ6
1UJK
1UJM
1UJN
1UJP
1UK8
1UKF
1UKG
1UKJ
1UKK
1UKL
1UKU
1UKV
1UKV
1UKW
1UKZ
1UL9
1ULH
1ULI
1ULI
1ULK
1ULQ
1ULS
1ULU
1ULV
1ULY
1ULZ
1UM0
1UM2
1UM5
1UM5
1UM8
1UMD
1UMD
1UMG
1UMH
1UMK
1UMM
1UMN
1UMR
1UMR
1UMV
1UMW
1UN0
1UN2
1UN3
1UN7
1UN8
1UNA
1UNF
1UNL
1UNL
1UNN
1UNN
1UNQ
1UOC
1UOH
1UOK
1UOL
1UOU
1UOW
1UOZ
1UP7
1UP8
1UP9
1UPB
1UPI
1UPK
1UPQ
1UPS
1UPT
1UPV
1UQR
1UQT
1UQW
1UQX
1UR3
1UR4
1UR5
1URH
1URJ
1URR
1URS
1URU
1URV
1URZ
1US0
1US3
1US5
1US7
1US7
1USC
1USG
1USJ
1USP
1USU
1USU
1USX
1USY
1USY
1UT1
1UT7
1UT9
1UTH
1UTN
1UTY
1UU1
1UU3
1UUF
1UUH
1UUL
1UUQ
1UUR
1UUY
1UUZ
1UUZ
1UV0
1UV7
1UW4
1UW6
1UW7
1UWH
1UWK
1UWS
1UWV
1UWZ
1UX5
1UX6
1UX8
1UXA
1UXO
1UXT
1UXY
1UXZ
1UY2
1UYJ
1UYL
1UYN
1UYP
1UYR
1UZ1
1UZ5
1UZB
1UZE
1UZP
1UZV
1UZX
1V00
1V02
1V04
1V0D
1V0E
1V0L
1V10
1V1A
1V1O
1V1Q
1V25
1V29
1V29
1V2A
1V2D
1V2X
1V2Z
1V30
1V33
1V37
1V3V
1V3W
1V3Y
1V43
1V47
1V4A
1V4P
1V4S
1V4V
1V4X
1V4X
1V54
1V54
1V54
1V54
1V54
1V58
1V5D
1V5V
1V5X
1V6C
1V6I
1V6S
1V6T
1V6Z
1V70
1V74
1V7C
1V7L
1V7R
1V7W
1V7Z
1V84
1V8A
1V8B
1V8C
1V8D
1V8F
1V8G
1V8P
1V8Y
1V93
1V97
1V9C
1V9D
1V9L
1V9M
1V9T
1V9Y
1VA4
1VA6
1VAK
1VAP
1VAV
1VB5
1VBF
1VC1
1VC4
1VCA
1VCL
1VCP
1VD5
1VDC
1VDH
1VDK
1VDR
1VDU
1VDW
1VE6
1VE9
1VEA
1VEC
1VEI
1VES
1VET
1VET
1VF5
1VF5
1VF5
1VF5
1VF7
1VFJ
1VFR
1VFS
1VFV
1VG0
1VG0
1VG8
1VGG
1VGQ
1VGS
1VGW
1VGY
1VH0
1VH1
1VH4
1VH5
1VH6
1VH9
1VHC
1VHE
1VHH
1VHI
1VHK
1VHM
1VHN
1VHO
1VHQ
1VHR
1VHS
1VHU
1VHV
1VHW
1VHX
1VHY
1VHZ
1VI0
1VI1
1VI2
1VI4
1VI6
1VI7
1VI9
1VIA
1VIC
1VIM
1VIO
1VIP
1VIU
1VIZ
1VJ1
1VJ2
1VJ7
1VJE
1VJF
1VJG
1VJH
1VJL
1VJN
1VJO
1VJP
1VJR
1VJT
1VJU
1VJV
1VJX
1VJZ
1VK0
1VK1
1VK2
1VK3
1VK4
1VK6
1VKC
1VKD
1VKE
1VKF
1VKH
1VKI
1VKJ
1VKK
1VKM
1VKN
1VKO
1VKP
1VKU
1VKV
1VKW
1VKY
1VKZ
1VL0
1VL1
1VL2
1VL4
1VL5
1VL6
1VL7
1VL8
1VLA
1VLB
1VLC
1VLF
1VLF
1VLG
1VLH
1VLI
1VLJ
1VLM
1VLO
1VLP
1VLQ
1VLR
1VLS
1VLU
1VLV
1VLW
1VM6
1VM7
1VM9
1VMA
1VMB
1VMD
1VME
1VMF
1VMH
1VMI
1VMJ
1VMK
1VMO
1VNS
1VOK
1VOM
1VP2
1VP4
1VP5
1VP6
1VP7
1VP8
1VPA
1VPB
1VPD
1VPE
1VPH
1VPJ
1VPK
1VPL
1VPM
1VPN
1VPP
1VPQ
1VPX
1VPY
1VQ0
1VQ2
1VQQ
1VQR
1VQS
1VQV
1VQW
1VR2
1VRT
1VRT
1VSR
1VYB
1VYD
1VYF
1VYI
1VYR
1VYU
1VZ0
1VZ6
1VZE
1VZO
1VZV
1VZY
1W07
1W0D
1W0I
1W0M
1W0N
1W0P
1W15
1W1H
1W1W
1W1W
1W1Z
1W23
1W25
1W27
1W2F
1W2W
1W2W
1W2Y
1W30
1W32
1W3B
1W3I
1W3O
1W3U
1W44
1W4X
1W5B
1W5F
1W5T
1W6K
1W6N
1W6S
1W6U
1W74
1W7B
1W7L
1W7W
1W85
1W85
1W8A
1W8I
1W8M
1W8O
1W96
1W97
1W9A
1W9C
1W9P
1W9S
1WA5
1WA5
1WA5
1WAD
1WB1
1WBA
1WC3
1WC9
1WCH
1WD5
1WD6
1WD7
1WDA
1WDC
1WDD
1WDD
1WDE
1WDI
1WDJ
1WDK
1WDK
1WDN
1WDU
1WDV
1WDY
1WE1
1WEH
1WEK
1WER
1WF3
1WF4
1WF4
1WFX
1WG8
1WGB
1WHI
1WIW
1WJ9
1WJG
1WJX
1WK2
1WK4
1WKC
1WKQ
1WKR
1WLF
1WLG
1WLJ
1WM1
1WMD
1WMG
1WMS
1WMU
1WMU
1WMX
1WMZ
1WND
1WOH
1WOQ
1WOS
1WOU
1WP1
1WP5
1WP6
1WPB
1WPG
1WPH
1WPN
1WPO
1WPW
1WQ8
1WR8
1WS8
1WSA
1WTD
1WTL
1WTY
1WU2
1WU3
1WUB
1WUE
1WUF
1WUU
1WV2
1WVI
1WWB
1WWC
1WWW
1WWW
1X6M
1X6O
1X72
1X79
1X7D
1X7F
1X7G
1X7Y
1X7Y
1X82
1X87
1X8H
1X8M
1X8Q
1X8V
1X91
1X92
1X94
1X99
1X9F
1X9F
1X9F
1X9F
1X9G
1X9I
1X9Z
1XA0
1XA1
1XA3
1XA6
1XAA
1XAR
1XAU
1XB2
1XB2
1XB3
1XB7
1XBB
1XBN
1XBT
1XBW
1XC2
1XC3
1XCB
1XCC
1XCG
1XCG
1XCL
1XCO
1XD3
1XD5
1XD7
1XDI
1XDN
1XDT
1XDY
1XDZ
1XE0
1XE1
1XE3
1XE7
1XEA
1XEB
1XED
1XER
1XEW
1XEW
1XEY
1XFH
1XFI
1XFJ
1XFK
1XFO
1XFP
1XFP
1XFS
1XG0
1XG5
1XG7
1XG8
1XG9
1XGK
1XGS
1XHC
1XHD
1XHK
1XHL
1XHO
1XHX
1XI3
1XI6
1XI9
1XIA
1XIM
1XIO
1XIP
1XIQ
1XIW
1XIW
1XIW
1XIZ
1XJ5
1XJC
1XJD
1XJU
1XKI
1XKK
1XKL
1XKN
1XKQ
1XKR
1XKS
1XKT
1XL4
1XLY
1XM3
1XM5
1XM7
1XM8
1XMA
1XMB
1XMC
1XMP
1XMR
1XMT
1XMX
1XNB
1XNF
1XNI
1XNV
1XNZ
1XO5
1XO7
1XOR
1XOU
1XP4
1XP8
1XPC
1XPJ
1XPM
1XPP
1XQ1
1XQ4
1XQ5
1XQ5
1XQ6
1XQ9
1XQA
1XQB
1XQG
1XQM
1XQO
1XQU
1XR4
1XR5
1XR7
1XRG
1XRH
1XRI
1XRK
1XS1
1XS5
1XSJ
1XSM
1XSO
1XSQ
1XSV
1XSZ
1XT9
1XTC
1XTC
1XTE
1XTG
1XTO
1XTP
1XU1
1XU2
1XU9
1XUB
1XUU
1XUV
1XV1
1XV2
1XVA
1XVH
1XVI
1XVP
1XVP
1XVQ
1XVS
1XVX
1XW6
1XW8
1XWA
1XWL
1XWM
1XWS
1XWV
1XX4
1XX6
1XX7
1XXF
1XXF
1XXL
1XY7
1XYG
1XYN
1XYP
1XYZ
1XZP
1XZP
1Y01
1Y01
1Y02
1Y08
1Y0E
1Y0G
1Y0H
1Y0Z
1Y13
1Y14
1Y14
1Y1L
1Y1O
1Y1X
1Y23
1Y2I
1Y2T
1Y4T
1Y60
1Y63
1Y6H
1Y6J
1Y6L
1Y7E
1Y88
1Y8C
1Y9I
1Y9Q
1Y9U
1YAA
1YAC
1YAL
1YAT
1YAV
1YB1
1YB5
1YBE
1YBF
1YCC
1YCN
1YCQ
1YCR
1YCS
1YCS
1YDG
1YDH
1YDW
1YEM
1YEY
1YFM
1YFO
1YFQ
1YG2
1YGE
1YGH
1YGP
1YGS
1YNA
1YPR
1YRG
1YTT
1ZBD
1ZBD
1ZFJ
1ZIN
1ZNC
1ZPD
1ZRN
1ZYM
256B
2A0B
2A2U
2AAA
2AAK
2ABK
2ACT
2ADM
2AE2
2AHJ
2AHJ
2AK3
2APS
2ARC
2ASR
2AT2
2AY1
2AYH
2AYQ
2AZA
2BAA
2BB2
2BBK
2BBK
2BC2
2BCE
2BEM
2BES
2BTM
2BTV
2BTV
2CAS
2CAU
2CB5
2CBL
2CCY
2CEV
2CHR
2CKB
2CKB
2CKB
2CMD
2CND
2CUA
2CY3
2CYH
2DLD
2DPM
2DRI
2E2A
2E2C
2EBN
2EIF
2END
2ENG
2FCB
2FCR
2FHE
2FOK
2FRV
2FRV
2GDM
2GMF
2GPR
2GSA
2GSQ
2HBG
2HFT
2HGS
2HHM
2HLC
2HMZ
2HRV
2HVM
2ILA
2ILK
2LDX
2LHB
2LIS
2LJR
2LTN
2MAD
2MAD
2MCM
2MEV
2MEV
2MEV
2MHR
2MNR
2MYS
2MYS
2MYS
2NAC
2NAP
2NCD
2OAT
2PF2
2PGD
2PGK
2PIA
2PII
2PKA
2PLC
2POR
2PRD
2PSP
2PTD
2PTH
2PVA
2PVB
2RHE
2RIG
2RMC
2RSL
2RSP
2SAK
2SAS
2SCP
2SCU
2SCU
2SGA
2SLI
2SPC
2SQC
2STV
2TBV
2TCT
2TGI
2TMG
2TNF
2TOH
2TPS
2TPT
2TRC
2TRC
2TRX
2UCZ
2VHB
2VSG
2XAT
2ZNC
3ADK
3APP
3C2C
3CAO
3CBH
3CLA
3CMS
3COX
3CSU
3CTS
3DFR
3EUG
3EZM
3FAP
3FIB
3GCB
3GRS
3KVT
3LAD
3LYN
3LZT
3MAG
3MDD
3NUL
3PCC
3PGA
3PMG
3PRN
3PRO
3PSG
3RAB
3RP2
3SDH
3SEB
3SIL
3SXL
3TAT
3TDT
3TGL
3THI
3TSS
3ULL
3VUB
4BCL
4CAT
4CPA
4FIV
4HB1
4MDH
4PFK
4PGA
4SBV
4SGB
4TS1
4UAG
4UBP
4XIA
5CSM
5CYT
5EAU
5NUL
5PAL
5RUB
5TMP
7A3H
7AAT
7AHL
7FD1
7LYZ
7MDH
7ODC
7TAA
830C
8ABP
8ACN
8TLN
9WGA
PDB ID
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