[Bioperl-l] query

[Paulo Almeida]

Hi,
I have never used bl2seq on perl, but this page may help you:

http://doc.bioperl.org/bioperl-run/Bio/Tools/Run/PiseApplication/bl2seq.html

(you can get bioperl-run from: http://bioperl.org/Core/Latest/index.shtml )

-Paulo

On Mon, Mar 14, 2005 at 07:29:30AM -0600, Mane, Ajay (UMR-Student) wrote:
> 
> Hi,
> 
> I am Ajay from University of Missouri - Rolla, doing research in
> bioinformatics. The bl2seq tool takes 2 sequences to align. I am
> interested in a list of sequences and want to compare them. Instead of
> putting 2 at a time, I have a large list of pairs to be analysed. How do
> I automate the process. Everytime running the tool and manually looking
> for the point where the coding of proteins start is time consuming. Can
> I write a perl file to automate the process. Can I get any help on this.
> I have gone through the bioperl modules, but could not find on bl2seq. 
> 
> Thanks,
> Ajay

-- 
Paulo Almeida
Instituto Gulbenkian de Ciencia
Apartado 14, 2781-901, Oeiras, PORTUGAL
tel  +351 21 446 46 35
fax  +351 21 440 79 70
http://www.igc.gulbenkian.pt