[Bioperl-l] Question about accessing tags in Bio::SeqFeature::Generic

[Hilmar Lapp]

*Always* provide the error message. Nobody of us has a crystal ball. 
'isn't working for me' why? because of error or because you need 
something that it isn't designed to return?

On Thursday, March 24, 2005, at 06:10  PM, iluminati at earthlink.net 
wrote:

> I have a question about a the Bio::SeqFeature::Generic that doesn't 
> seem clear to me from the docs.  Here's an example of the seq feature 
> I'm creating...
>
> my $RepeatElement = new Bio::SeqFeature::Generic(     -start => 
> $L1HERVLine[6],
>                                            -end => $L1HERVLine[7],
>                                            -strand => $L1HERVLine[9],
>                                            -source => 'Repeat',
>                                            -tag =>{
>                                            -repName => $L1HERVLine[10],
>                                            -repClass => 
> $L1HERVLine[11],
>                                            -repFamily => 
> $L1HERVLine[12]}
>                                            );
>
> Now, the feature itself creates fine.  However, it isn't clear how I 
> would retrieve information from the tag has.  The get_tag_value() 
> function isn't working for me, and I can't access the hash directly.  
> What should I do to be able to access the data?  Let me know, and 
> thanks in advance.
>
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>
>
-- 
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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