[Bioperl-l] Question about accessing tags in
Bio::SeqFeature::Generic
iluminati at earthlink.net
iluminati at earthlink.net
Thu Mar 24 21:10:51 EST 2005
I have a question about a the Bio::SeqFeature::Generic that doesn't seem
clear to me from the docs. Here's an example of the seq feature I'm
creating...
my $RepeatElement = new Bio::SeqFeature::Generic( -start =>
$L1HERVLine[6],
-end => $L1HERVLine[7],
-strand => $L1HERVLine[9],
-source => 'Repeat',
-tag =>{
-repName => $L1HERVLine[10],
-repClass => $L1HERVLine[11],
-repFamily => $L1HERVLine[12]}
);
Now, the feature itself creates fine. However, it isn't clear how I
would retrieve information from the tag has. The get_tag_value()
function isn't working for me, and I can't access the hash directly.
What should I do to be able to access the data? Let me know, and thanks
in advance.
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