[Bioperl-l] cannot find path to blastall
James Gregory
j1gregor at biomail.ucsd.edu
Tue Mar 15 16:07:46 EST 2005
I'm trying to set up a standalone blast and I'm getting an error message
that says
MSG: cannot find path to blastall
code:
my @params = (program => 'blastp',
database => 'db.psq');
my $factory = Bio::Tools::Run::StandAloneBlast->new(@params);
my $path = '/path/to/blastall/';
$path = $factory->program_path($path);
#BLAST
my $blast_report = $factory->blastall($blast_seq);
any help would be appreciated.
James Gregory
University of California, San Diego
Department of Biological Sciences
More information about the Bioperl-l
mailing list