[Bioperl-l] cannot find path to blastall

[Diego Mauricio Riaño Pachón]

Hi James

BLOSUM and PAM matrices should be in the data subdir of the main blast
directory.
I would say that the best it to kept all the blast executables together with
your data dir in on directory, something like:
blast_dir
    data
In blast_dir you leave the execs, and in data the matrices, then add
blast_dir to your path, in unix usung bash you do it like this:
export PATH=$PATH:/path/to/blast_dir

I hope this helps

Diego
_______________________________________
Diego Mauricio Riano Pachon
Biologist
Institute of Biology and Biochemistry
Potsdam University
Karl-Liebknecht-Str. 24-25
Haus 20
14476 Golm
Germany
Tel:0331/977-2809
http://www.geocities.com/dmrp.geo/