[Bioperl-l] Extraction from UniProt flatfile

[Heikki Lehvaslaiho]

Take a look at the BioSQL project. There is a cvs repository called 
bioperl-db. It contains the script load_seqdatabase.pl, that does what you 
need. The database schema is in a repository biosql-schema as it is shared 
among several language projects.

	-Heikki



> I am writing a perl program that will extract data from a UniProt
> flatfile so that I can automatically put data into
> my PostgreSQL database. I am taking out name, protein ID number,
> references etc from the file.
>
>  Does anyone know if there is a script available to do this already?
>
>  Many thanks,
>
>  Stephen
>
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      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho    heikki at_ebi _ac _uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
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  _/  _/  _/  Cambridge, CB10 1SD, United Kingdom
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