[Bioperl-l] Bio::LiveSeq::Transcript query from new bioperl user

[Daniel Jeffares]

This is a request for help from a *very* new bioperl user. IM also 
pretty new to perl....

I want to use the Bio::LiveSeq::Transcript->new method to make a 
transcript object from an .embl file.

I then want to use the $frame = $transcript->frame($label) method so 
that I can trim sub-sections of the transcript to include only complete 
codons.

So, in other words, I want to collect subsets of a transcript 
(coordinates that I have defined earlier), and then trim those 
coordinates to the nearest complete codons. And the get the sequence of 
those coordinates.

____________________________
Daniel Jeffares
Wellcome Trust Sanger Institute
Wellcome Trust Genome Campus
Hinxton, Cambridge, CB10 1SA, UK
Phone: +44(0)1223 834244 x 7297
____________________________

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