September 2004 Archives by thread

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Starting: Wed Sep 1 00:17:18 EST 2004
Ending: Thu Sep 30 22:49:40 EST 2004
Messages: 191

• [Bioperl-l] Re: [Bioperl-guts-l] genbank accession from swissprot   Jason Stajich
  • [Bioperl-l] Re: genbank accession from swissprot   Hilmar Lapp
• [Bioperl-l] Re: [Bioperl-guts-l] genbank accession from swissprot   James Wasmuth
• [Bioperl-l] Re: genbank accession from swissprot]   James Wasmuth
• [Bioperl-l] retrieve specific pubmed record?   Baranidharan P
  • [Bioperl-l] retrieve specific pubmed record?   Sean Davis
  • [Bioperl-l] retrieve specific pubmed record?   Brian Osborne
• [Bioperl-l] Re: [Bioperl-guts-l] BPlite questions   James Wasmuth
• [Bioperl-l] SeqHound release v3.0 now available   Ian Donaldson
• [Bioperl-l] Bio::Biblio question   Sean Davis
• [Bioperl-l] Bio::Biblio question   Baranidharan P
• [Bioperl-l] Bio::Biblio question   Baranidharan P
  • [Bioperl-l] Bio::Biblio question   Sean Davis
• [Bioperl-l] remove from the mailing list   satyanarayana devaraju
  • [Bioperl-l] remove from the mailing list   Chris Dagdigian
• [Bioperl-l] Das version   Lincoln Stein
• [Bioperl-l] build Align object from scratch?   Fernan Aguero
  • [Bioperl-l] build Align object from scratch?   Jason Stajich
  • [Bioperl-l] build Align object from scratch?   Scott Markel
• [Bioperl-l] Displaying an alignment using Bio::Graphics   Fernan Aguero
  • [Bioperl-l] Displaying an alignment using Bio::Graphics   Lincoln Stein
• [Bioperl-l] bioperl-db performance   Alex Zelensky
  • [Bioperl-l] bioperl-db performance   Alex Zelensky
• [Bioperl-l] please add me   Rambabu Gudavalli
• [Bioperl-l] PSI-BLAST Matrix Parser?   James Thompson
  • [Bioperl-l] PSI-BLAST Matrix Parser?   Stefan A Kirov
    • [Bioperl-l] PSI-BLAST Matrix Parser?   James Thompson
      • [Bioperl-l] PSI-BLAST Matrix Parser?   Brian Osborne
      • [Bioperl-l] PSI-BLAST Matrix Parser?   Stefan Kirov
      • [Bioperl-l] PSI-BLAST Matrix Parser?   James Thompson
• [Bioperl-l] Gene/protein ID synonyms   Gabriel Berriz
  • [Bioperl-l] Gene/protein ID synonyms   Stefan A Kirov
    • [Bioperl-l] Gene/protein ID synonyms   Boris Steipe
• [Bioperl-l] data conversion   unni krishnan
  • [Bioperl-l] data conversion   Sean Davis
• [Bioperl-l] howto save blast parser output   Karolina Zavisek
• [Bioperl-l] [Fwd: fixed bug... how do I submit the code?]   Chris Dagdigian
  • [Bioperl-l] [Fwd: fixed bug... how do I submit the code?]   Stefan A Kirov
  • [Bioperl-l] [Fwd: fixed bug... how do I submit the code?]   Stefan A Kirov
• [Bioperl-l] bio   kavitha venugopal
• [Bioperl-l] Blat running/parsing problem   Holger Klein
• [Bioperl-l] Re: how to save blast parser output   Todd Naumann
• [Bioperl-l] Help installing BioPerl   Michael S. Robeson II
  • [Bioperl-l] Help installing BioPerl   Brian Osborne
    • [Bioperl-l] Help installing BioPerl   Michael Robeson
      • [Bioperl-l] Help installing BioPerl   Jason Stajich
      • [Bioperl-l] Help installing BioPerl   Michael Robeson
      • [Bioperl-l] Help installing BioPerl   Jason Stajich
      • [Bioperl-l] Help installing BioPerl   Brian Osborne
      • [Bioperl-l] Help installing BioPerl   Michael Robeson
      • [Bioperl-l] Help installing BioPerl   Remo Sanges
      • [Bioperl-l] Help installing BioPerl   Michael Robeson
• [Bioperl-l] perl moudules for Degenerate Primer Design   Sun, Jian
  • [Bioperl-l] perl moudules for Degenerate Primer Design   Brian Osborne
• [Bioperl-l] perl moudules for Degenerate Primer Design   Davis, Sean (NIH/NHGRI)
• [Bioperl-l] validate_species_name   Wes Barris
  • [Bioperl-l] validate_species_name   Brian Osborne
• [Bioperl-l] pad individual tracks using panel   Simon McGowan
• [Bioperl-l] remote blast - plain text blast report   Nathan Haigh
  • [Bioperl-l] remote blast - plain text blast report   Jason Stajich
• [Bioperl-l] Options for Compiling Perl 5.8.5 Running on an UltraSparc with Solaris 2.9?   James D. White
• [Bioperl-l] help with remote blast   Michael S. Robeson II
  • [Bioperl-l] help with remote blast   Barry Moore
• [Bioperl-l] pad individual tracks using panel   Simon McGowan
  • [Bioperl-l] pad individual tracks using panel   Lincoln Stein
• [Bioperl-l] (no subject)   Pankaj
• [Bioperl-l] rmsd calculation   Pankaj
• [Bioperl-l] 'Nightly build' tracking for Bioperl   Peter van Heusden
  • [Bioperl-l] 'Nightly build' tracking for Bioperl   Dave Howorth
• [Bioperl-l] IMAGE clones   Sean Davis
• [Bioperl-l] IMAGE clones   Law, Annie
• [Bioperl-l] Re: [Bioperl-announce-l] bioperl mailing list   Heikki Lehvaslaiho
• [Bioperl-l] Bioperl tests   Peter van Heusden
  • [Bioperl-l] Bioperl tests   Ewan Birney
  • [Bioperl-l] Bioperl tests   Jason Stajich
    • [Bioperl-l] Bioperl tests   Peter van Heusden
• [Bioperl-l] (no subject)   David Burdick
• [Bioperl-l] Error message.   Sun, Jian
  • [Bioperl-l] Error message.   Brian Osborne
  • [Bioperl-l] Error message.   Jason Stajich
    • [Bioperl-l] Error message.   Thomas J Keller
      • [Bioperl-l] Error message.   Andreas Kahari
• [Bioperl-l] Bugz in Consense   Devin Scannell
  • [Bioperl-l] Bugz in Consense   Brian Osborne
• [Bioperl-l] Build new Swiss-Prot Seq   hafiz hafiz
  • [Bioperl-l] Build new Swiss-Prot Seq   Brian Osborne
• [Bioperl-l] Build New SwissProt Seq   hafiz hafiz
  • [Bioperl-l] Build New SwissProt Seq   Brian Osborne
• [Bioperl-l] Build new SwissProt Seq   hafiz hafiz
• [Bioperl-l] extracting GI number from BLAST hit   Joshua Orvis
  • [Bioperl-l] extracting GI number from BLAST hit   Jason Stajich
• [Bioperl-l] primer3 install on Mac OS 10.3.5   Thomas J Keller
  • [Bioperl-l] primer3 install on Mac OS 10.3.5   Jason Stajich
• [Bioperl-l] passing paramteters to primer3   Thomas J Keller
• [Bioperl-l] Writing embl entry to string   TAPO (Thomas Agersten Poulsen)
  • [Bioperl-l] Writing embl entry to string   Brian Osborne
  • [Bioperl-l] Writing embl entry to string   Peter van Heusden
    • [Bioperl-l] Writing embl entry to string   Bernhard Schmalhofer
• [Bioperl-l] Re: [BioC] Error in kooperberg procedure   Sean Davis
• [Bioperl-l] validation of primer3 for QRT-PCR   Thomas J Keller
• [Bioperl-l] passing paramteters to primer3   Marc Logghe
  • [Bioperl-l] passing paramteters to primer3   Thomas J Keller
• [Bioperl-l] Bio:;Annotation::Reference;   hafiz hafiz
  • [Bioperl-l] Bio:;Annotation::Reference;   Hilmar Lapp
• [Bioperl-l] shell ideas   Gabriel Horner
  • [Bioperl-l] shell ideas   Jason Stajich
• [Bioperl-l] Refseq Ids   Tomas Marques
  • [Bioperl-l] Refseq Ids   Jeremy Semeiks
    • [Bioperl-l] Refseq Ids   Sean Davis
• [Bioperl-l] Build new Seq in SwissProt   hafiz hafiz
  • [Bioperl-l] Build new Seq in SwissProt   Brian Osborne
• [Bioperl-l] Build new Seq in SwissProt   Marc Logghe
• [Bioperl-l] Re: bug report Bio::TreeIO::newick   Jason Stajich
• [Bioperl-l] Refseq Ids   Marques Bonet
  • [Bioperl-l] Refseq Ids   Jason Stajich
    • [Bioperl-l] Refseq Ids   Stephen Baird
  • [Bioperl-l] Refseq Ids   Barry Moore
• [Bioperl-l] how to install clustalw.pm and PAML/* (codeml.pm. yn00..)   szhan at uoguelph.ca
• [Bioperl-l] Problem installing bioperl-ext   Thomas J Keller
  • [Bioperl-l] Problem installing bioperl-ext   Jason Stajich
• [Bioperl-l] torturing newbies are we? SeqIO HowTo question   Thomas J Keller
  • [Bioperl-l] torturing newbies are we? SeqIO HowTo question   Jason Stajich
    • [Bioperl-l] torturing newbies are we? SeqIO HowTo question   Brian Osborne
  • [Bioperl-l] torturing newbies are we? SeqIO HowTo question   Brian Osborne
• [Bioperl-l] Missing base argument at C:/Perl/site/lib/PPM/Repository.pm ?   szhan at uoguelph.ca
• [Bioperl-l] problem parsing MEME file   Diego Riano
  • [Bioperl-l] problem parsing MEME file   Stefan Kirov
    • [Bioperl-l] problem parsing MEME file   James Thompson
      • [Bioperl-l] problem parsing MEME file   Stefan Kirov
• [Bioperl-l] Re: how to install clustalw.pm and PAML::* (such as codeml.pm, baseml and yn00.pl on windows XP   Jason Stajich
• [Bioperl-l] how to install bioperl-run on window XP?   szhan at uoguelph.ca
• [Bioperl-l] Writing embl entry to string   TAPO (Thomas Agersten Poulsen)
• [Bioperl-l] Nexus tree format and nexus.pm version 1.8   George Magklaras
  • [Bioperl-l] Nexus tree format and nexus.pm version 1.8   Jason Stajich
• [Bioperl-l] About reverse translation using CodonUsage table ?   Sun, Jian
• [Bioperl-l] Has anybody got the clustalw.pm for Windows?   jesus sanchez ruiz
• [Bioperl-l] How can I get all the info of a Database object?   jesus sanchez ruiz
• [Bioperl-l] names/id in multi-alignment files   Marco Landwehr
  • [Bioperl-l] names/id in multi-alignment files   martin
  • [Bioperl-l] names/id in multi-alignment files   Jason Stajich
• [Bioperl-l] Cannot make test on bioperl-db   황미녕
  • [Bioperl-l] Cannot make test on bioperl-db   Hilmar Lapp
    • [Bioperl-l] Cannot make test on bioperl-db   황미녕
• [Bioperl-l] Has anybody got the clustalw.pm for Windows?   jesus sanchez ruiz
• [Bioperl-l] What's wrong with openBQS service?   Wuming Gong
• [Bioperl-l] About reverse translation using CodonUsage table ?   Richard Adams
• [Bioperl-l] About reverse translation using CodonUsage table ?   Richard Adams
• [Bioperl-l] Cannot make test on bioperl-db   Hilmar Lapp
• [Bioperl-l] Re:About reverse translation using.....   Todd Naumann
• [Bioperl-l] Retrieving from an indexed fasta file into a LargeSeq object   Christopher Porter
  • [Bioperl-l] Retrieving from an indexed fasta file into a LargeSeq object   Jason Stajich
    • [Bioperl-l] Retrieving from an indexed fasta file into a LargeSeq object   Christopher Porter
• [Bioperl-l] GFF MySQL sever failure   Yunlong Liu
• [Bioperl-l] Bioperl OBO format parser   Scott Cain
  • [Bioperl-l] Re: [Gmod-schema] Bioperl OBO format parser   Allen Day
    • [Bioperl-l] Re: [Gmod-schema] Bioperl OBO format parser   Chris Mungall
• [Bioperl-l] Help needed on GFF   Yunlong Liu
  • [Bioperl-l] Help needed on GFF   Jason Stajich
  • [Bioperl-l] Help needed on GFF   Lincoln Stein
• [Bioperl-l] skip "exception"   Qunfeng
  • [Bioperl-l] skip "exception"   Stefan Kirov
    • [Bioperl-l] skip "exception"   Qunfeng
    • [Bioperl-l] skip "exception"   Hilmar Lapp
• [Bioperl-l] Unable to retrieve genebank file with GI number   Rambabu Gudavalli
  • [Bioperl-l] Unable to retrieve genebank file with GI number   Brian Osborne
• [Bioperl-l] RE: About reverse translation using.....   Sun, Jian
  • [Bioperl-l] Re: About reverse translation   Todd Naumann
• [Bioperl-l] XML for Bioinformatics   BORN II CODE
• [Bioperl-l] About reverse translation using CodonUsage table ?   Richard Adams
• [Bioperl-l] genbank to cds   rmaps005 at cib.csic.es
  • [Bioperl-l] genbank to cds   Jason Stajich
• [Bioperl-l] genbank to cds   Juan Carlos Sánchez Ferrero
  • [Bioperl-l] genbank to cds   Jason Stajich
• [Bioperl-l] Gene positions   Marques Bonet
  • [Bioperl-l] Gene positions   Sean Davis
• [Bioperl-l] problem using lagan.pm   Xiangli Zhang
  • [Bioperl-l] problem using lagan.pm   Jason Stajich
• [Bioperl-l] Bio::Graphics : Switching Glyph Colors On One Track   Lincoln Stein
• [Bioperl-l] Bio::Graphics::Panel   Lincoln Stein
• [Bioperl-l] Lining Up Glyphs on Bio::Panel   Lincoln Stein
• [Bioperl-l] Ask help for Bio::Tools::Run::Primer3   Fengkai Zhang (Tony)
  • [Bioperl-l] Ask help for Bio::Tools::Run::Primer3   Thomas J Keller
• [Bioperl-l] Ask help for Bio::Tools::Run::Primer3   Ewing, Adam D.
• [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Allen Day
• [Bioperl-l] Attention: upcoming BioPerl 1.5 developer's release   Aaron J. Mackey
  • [Bioperl-l] Attention: upcoming BioPerl 1.5 developer's release   James Thompson
• [Bioperl-l] Error with PAML: Can't unlink file ...   jesus sanchez ruiz
• [Bioperl-l] Existing bioperl module/function?   Sun, Jian
  • [Bioperl-l] Existing bioperl module/function?   Jason Stajich
• [Bioperl-l] Attention: upcoming BioPerl 1.5 developer's release   James Thompson
• [Bioperl-l] Questions on Representing Protein Ambiguity   James Thompson

Last message date: Thu Sep 30 22:49:40 EST 2004
Archived on: Fri Oct 1 15:01:29 EST 2004

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