[Bioperl-l] Error message.

[Thomas J Keller]

The message I received had html markup (>) within the perl. I don't 
know if it's present in his program. Obviously if it is, it is a syntax 
error.

>>
>> my $in = new Bio::AlignIO ( -file => $ARGV[0], -format => 
>> 'clustalw' );
>>
>> my $out = newFh Bio::AlignIO ( -fh => \*STDOUT, -format => 
>> 'clustalw' );
>>
>> my $aln = $in->next_aln();
>>
>>
vs

> my $in = new Bio::AlignIO ( -file => $ARGV[0], -format => 'clustalw' );
>
> my $out = newFh Bio::AlignIO ( -fh => \*STDOUT, -format => 'clustalw' 
> );
>
> my $aln = $in->next_aln();

Could it be that simple?
good luck,
Tom Keller