[Bioperl-l] Re: how to install clustalw.pm and PAML::* (such as codeml.pm, baseml and yn00.pl on windows XP

[Jason Stajich]

Basically get bioperl-run from http://bioperl.org/DIST. Install this 
like you would any other perl module.

I'm not sure how to do it with PPM since no one has made a bioperl-run 
PPM - you'd have to roll your own PPM which isn't that hard.

Perhaps other ActiveState perl users could help out.

-jason

On Sep 21, 2004, at 11:26 AM, szhan at uoguelph.ca wrote:

> Hello, Jason,
> Can you please tell me how to install clustalw.pm and PAML::* (such as
> codeml.pm, baseml and yn00.pl) on windows XP?
> I have run perl-5.8 on windows XP and installed bioperl 1.4 using 
> active state
> PPM. Now I'd like to do Multiple Sequence Alignment(MSA) and 
> Phylogenetic
> Analysis using Maximum Likelihood (PAML) analyses from within Bioperl 
> as you
> showed in Bio::Tools::Phylo::PAML HOWTO of Bioperl:
> use Bio::Tools::Run::Phylo::PAML::Codeml;
> use Bio::Tools::Run::Alignment::Clustalw;
> Thank you in advance.
> Josh
>
>
--
Jason Stajich
jason.stajich at duke.edu
http://www.duke.edu/~jes12/