[Bioperl-l] problem parsing MEME file

[Diego Riano]

Hi all

I have written a small script to parse MEME results, but I am getting
and error.  I am using Bioperl 1.4 and MEME 3.0.10, it should work but
if does not.  could anyone help me?

Here is the script:

#!/usr/bin/perl

use strict;
use warnings;

use Bio::AlignIO;

my $inputf = "$ARGV[0]";
my $in  = Bio::AlignIO->new(-file => $inputf,
                            -format => 'meme');


while ( my $aln = $in->next_aln() ) {
        print "X\n";
    }

This is the error i got:

-------------------- WARNING ---------------------
MSG: Unrecognized format:
6_04024                     163 5.87e-128 DYSCGGDDSG
TEEEQAAFMKELERFYREKLMEFKPPKFYGEGLNCLKLWRQVTGLGGYDQVTSCKLWRQVGESFKPPKTCTTVSWTFRNFYEKALLEYEKHKIETGEFQV AASNLTERIT
 
---------------------------------------------------

thanks

Diego Riano
-- 
_____________________________________
Diego Mauricio Riano Pachon
Biologist
Institute of Biology and Biochemistry
Potsdam University
Karl-Liebknecht-Str. 24-25
Haus 20
14476 Golm
Germany
Tel:0331/977-2809
http://bioinf.ibun.unal.edu.co/~gotem
http://www.geocities.com/dmrp.geo/