[Bioperl-l] Cannot make test on bioperl-db

황미녕 mnhwang at kisti.re.kr
Thu Sep 23 04:25:22 EDT 2004


I have installed the Oracle version of BioSQL and bioperl-db, 
and they compile and install fine

However, make
test on bioperl-db fails miserably with hundreds of messages similar to
the following on virtually every module:

PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/cluster.......driver not set at t/DBTestHarness.pm line 106
        DBTestHarness::driver('DBTestHarness=HASH(0x871cccc)') called at t/DBTestHarness.pm line 204
        DBTestHarness::create_db('DBTestHarness=HASH(0x871cccc)') called at t/DBTestHarness.pm line 94
        DBTestHarness::new('DBTestHarness','biosql') called at t/cluster.t line 19
t/cluster.......dubious                                                      
        Test returned status 255 (wstat 65280, 0xff00)
Scalar found where operator expected at (eval 154) line 1, near "'int'  $__val"
        (Missing operator before   $__val?)
DIED. FAILED tests 1-160
        Failed 160/160 tests, 0.00% okay
t/comment.......driver not set at t/DBTestHarness.pm line 106
        DBTestHarness::driver('DBTestHarness=HASH(0x863fccc)') called at t/DBTestHarness.pm line 204
        DBTestHarness::create_db('DBTestHarness=HASH(0x863fccc)') called at t/DBTestHarness.pm line 94
        DBTestHarness::new('DBTestHarness','biosql') called at t/comment.t line 20
t/comment.......dubious                                                      
        Test returned status 255 (wstat 65280, 0xff00)
..............


I am wary of wasting time trying to load real data if the test fails
like this - is it a 'fatal' problem or can I ignore it and load real
data anyway?

Any idea what's going on here? I can't figure it out.

cheers,
mnhwang


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