[Bioperl-l] Refseq Ids

[Sean Davis]

I haven't checked rat directly, but I think they are also available at the
same place as genbank flat files, in case you need that detail.


----- Original Message -----
From: "Jeremy Semeiks" <jrs at farviolet.com>
To: "Tomas Marques" <tomas_marques at hotmail.com>;
<bioperl-l at portal.open-bio.org>
Sent: Sunday, September 19, 2004 5:07 PM
Subject: Re: [Bioperl-l] Refseq Ids


> On Sat, Sep 18, 2004 at 09:59:46AM +0200, Tomas Marques wrote:
> > How can I obtain all RefSeq IDs from Rat genome? (using BioPerl, of
> > course...)
> >
> >
> >
> > I'm using Bio::DB::RefSeq but I have not been able to locate any
> > method(inherit or not)to do it...
>
> Hi Tomas,
>
> The most straightforward way to do this might be to download the rat
> Refseq files directly. They're at
>
> ftp://ftp.ncbi.nlm.nih.gov/refseq/R_norvegicus/
>
> You should be able to use the Bioperl FASTA parser (part of the SeqIO
> module) to parse these.
>
> HTH,
> Jeremy
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