[Bioperl-l] IMAGE clones

[Law, Annie]

Hi Sean,

I don't know if this is what you are looking for but there are files from
the image consortium
Ftp site.  You can load the file into a table in your database and get the
info you want.
Here is the link.  It should be in this directory but if it's not there it
will be in a directory near by.

ftp://image.llnl.gov/image/outgoing/arrayed_plate_data/cumulative/

hth,
Annie.


-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org] On Behalf Of Sean Davis
Sent: Wednesday, September 15, 2004 6:51 AM
To: Bioperl
Subject: [Bioperl-l] IMAGE clones


Just a quick (not entirely bioperl-related) question...

I have a microarray design that is described in terms of IMAGE clones.  
I am interested in getting the sequences for these clones.  However, I 
can't seem to find a resource for doing so directly (is there one?).  I 
do see that several genbank accessions can be associated with the same 
IMAGE clone, so I could get all such genbanks associated with each 
clone and use those as surrogates, ultimately for use in blast 
analyses.  How can I construct a query (or can I) that pulls these 
genbanks by clone id, or is someone aware of a reliable mapping from 
image clone to genbank accession?

Thanks,
Sean

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