[Bioperl-l] data conversion

[Sean Davis]

I would map them to unigene.  The NCBI ftp site (ftp.ncbi.nih.gov) has 
some files in the unigene repository that you will need.  You will 
proabably have to write some code to do it, though.

Sean

On Sep 8, 2004, at 5:46 PM, unni krishnan wrote:

>
> Is there any way to convert the accession ids (given below) to a single
> ID (Unigene, genbank, locuslink, swissport, genpept, GI number, any of
> them will do). These data are proteins  and wanted to know whether
> bioperl can query .
>
> Accession #
>
> gb|AAA40936.1
>
> gb|AAA41660.1
>
> pir|JC1039
>
> pir|S37300
>
> rf|NP_036686.1
>
> rf|NP_036737.1
>
> rf|XP_345137.1
>
> sp|P04764
>
> sp|P11981
>
> sp|P17209
>
> spt|P00564
>
> spt|P02563
>
> spt|Q63679
>
> spt|Q9WVK7
>
> trm|Q924K3
>
> trm|Q9ER34
> trm|Q9JJ79
>
> Thanks
>
> uk
>
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