[Bioperl-l] Unable to retrieve genebank file with GI number
Rambabu Gudavalli
ram at i122server.vu-wien.ac.at
Mon Sep 27 07:04:28 EDT 2004
Dear Sirs,
i am trying to connect the genbank remotely with GI number using
the bioperl
in this link, they are telling we can connect genbank remotely using GI
numbers
http://doc.bioperl.org/releases/bioperl-1.4/Bio/DB/GenBank.html
i am retrieving the data using the Accession numbers but not with GI
numbers.
with GI number, is not connecting and it is giving warning like this
-------------------- WARNING ---------------------
MSG: acc (gb|24585102) does not exist
---------------------------------------------------
Use of uninitialized value in length at /Library/Perl/5.8.1/Bio/Perl.pm
line 271.
Use of uninitialized value in concatenation (.) or string at
/Library/Perl/5.8.1/Bio/Perl.pm line 283.
You have a non object [] passed to write_sequence. It maybe that you
want to use new_sequence to make this string into a sequence object? at
/Library/Perl/5.8.1/Bio/Perl.pm line 283
Bio::Perl::write_sequence('>x.fasta','fasta','undef') called at
ConnectGenbak1.pl line 14
any help,
thanks,
Ram
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