[Bioperl-l] Help installing BioPerl

[Michael Robeson]

Actually the file on the CPAN was:
  "B/BI/BIRNEY/bioperl-run-1.4.tar.gz"

Maybe that's it? This file with the added "-run-" in the name might be 
something different?

But, yes "perldoc Bio::Perl" does return the Bio::Perl synopsis.

-Mike


On Sep 13, 2004, at 11:16 AM, Jason Stajich wrote:

> But are you sure you installed bioperl-1.4.tar.gz....it doesn't sound 
> like it.
> "B/BI/BIRNEY/bioperl-1.4.tar.gz"
>
> Does this return anything?
> % perldoc Bio::Perl
>
> On Sep 13, 2004, at 12:58 PM, Michael Robeson wrote:
>
>> In a sense , yes.
>>
>> When I try to run any script using Bio::Perl I get this error:
>>
>> "Can't locate Bio/Perl.pm in @INC".
>>
>> -Mike
>>
>> On Sep 13, 2004, at 6:08 AM, Brian Osborne wrote:
>>
>>> Mike,
>>>
>>> Do you mean that the test for Bio::Perl is failing?
>>>
>>> Brian O.
>>>
>>> -----Original Message-----
>>> From: bioperl-l-bounces at portal.open-bio.org
>>> [mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Michael S.
>>> Robeson II
>>> Sent: Sunday, September 12, 2004 12:16 PM
>>> To: bioperl-l at portal.open-bio.org
>>> Subject: [Bioperl-l] Help installing BioPerl
>>>
>>> I have successfully installed BioPerl on several machines running Mac
>>> OS X (10.3.5) w/o any trouble. However one of my machines (same OS) 
>>> the
>>> install is not working. Basically I keep getting "Error 2" problems 
>>> at
>>> the end of an install.
>>>
>>> I've used the "perl -MCPAN -eshell" as both a normal user and root 
>>> and
>>> it still does not work. I've tried this while installing the
>>> "Bundle::BioPerl and the "B/BI/BIRNEY/bioperl-run-1.4.tar.gz".
>>>
>>> Basically what it amounts to is that I get an error that says "Can't
>>> locate Bio/Perl.pm in @INC". I basically know what this means but I 
>>> am
>>> not so sure how to fix this or what to do.
>>>
>>> Any help would be greatly appreciated.
>>>
>>> -Thanks
>>> -Mike
>>>
>>> _______________________________________________
>>> Bioperl-l mailing list
>>> Bioperl-l at portal.open-bio.org
>>> http://portal.open-bio.org/mailman/listinfo/bioperl-l
>>>
>>>
>>
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>>
>>
> --
> Jason Stajich
> jason.stajich at duke.edu
> http://www.duke.edu/~jes12/
>