[Bioperl-l] primer3 install on Mac OS 10.3.5

[Jason Stajich]

Remove the -static

-jason
On Sep 16, 2004, at 3:22 PM, Thomas J Keller wrote:

> Sorry if this isn't strictly bioperl.
> I'm installing primer3 but got the following error:
>
> $ make primer3_core
> gcc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -include 
> /usr/include/sys/types.h -O2 -DDPAL_MAX_ALIGN=36 
> -DMAX_PRIMER_LENGTH=36 primer3_main.c
> gcc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -include 
> /usr/include/sys/types.h -O2 -DDPAL_MAX_ALIGN=36 
> -DMAX_PRIMER_LENGTH=36 primer3.c
> primer3_release.h:3: warning: `pr_release' defined but not used
> gcc -g -Wall -D__USE_FIXED_PROTOTYPES__ -include 
> /usr/include/sys/types.h -O2   -c -o oligotm.o oligotm.c
> primer3_release.h:3: warning: `pr_release' defined but not used
> gcc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -include 
> /usr/include/sys/types.h -O2 -DDPAL_MAX_ALIGN=36 
> -DMAX_PRIMER_LENGTH=36 -o dpal_primer.o dpal.c
> primer3_release.h:3: warning: `pr_release' defined but not used
> gcc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -include 
> /usr/include/sys/types.h -O2 -DDPAL_MAX_ALIGN=36 
> -DMAX_PRIMER_LENGTH=36 -o format_output.o format_output.c
> gcc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -include 
> /usr/include/sys/types.h -O2 -DDPAL_MAX_ALIGN=36 
> -DMAX_PRIMER_LENGTH=36 -o boulder_input.o boulder_input.c
> primer3_release.h:3: warning: `pr_release' defined but not used
> gcc -g -o primer3_core primer3_main.o primer3.o oligotm.o 
> dpal_primer.o format_output.o boulder_input.o '-static' -lm
> ld: can't locate file for: -lcrt0.o
> make: *** [primer3_core] Error 1
>
>
> I'm running Mac OS X 10.3.5
>
> Thanks for any suggestions,
> Tom Keller
>
> Tom Keller, Ph.D.
> http://www.ohsu.edu/research/core
> kellert at ohsu.edu
> 503-494-2442_______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu
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