[Bioperl-l] Refseq Ids

[Jeremy Semeiks]

On Sat, Sep 18, 2004 at 09:59:46AM +0200, Tomas Marques wrote:
> How can I obtain all RefSeq IDs from Rat genome? (using BioPerl, of
> course...)
> 
>  
> 
> I'm using Bio::DB::RefSeq but I have not been able to locate any
> method(inherit or not)to do it...

Hi Tomas,

The most straightforward way to do this might be to download the rat
Refseq files directly. They're at

ftp://ftp.ncbi.nlm.nih.gov/refseq/R_norvegicus/

You should be able to use the Bioperl FASTA parser (part of the SeqIO
module) to parse these.

HTH,
Jeremy