August 2003 Archives by date

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Starting: Fri Aug 1 01:18:44 EST 2003
Ending: Sun Aug 31 22:28:43 EST 2003
Messages: 248

• [Bioperl-l] blastcl3   Jennifer Thornton
• [Bioperl-l] $_ assignment question   simon andrews (BI)
• [Bioperl-l] Errors generated from example code in HOW-TO section   Matthew Betts
• [Bioperl-l] Errors generated from example code in HOW-TO sect ion   simon andrews (BI)
• [Bioperl-l] Errors generated from example code in HOW-TO sect ion   Matthew Betts
• [Bioperl-l] Errors generated from example code in HOW-TO section   Aaron J Mackey
• [Bioperl-l]more inheritance   Richard Adams
• [Bioperl-l] $_ assignment question   Jonathan Barber
• [Bioperl-l] Errors generated from example code in HOW-TO section   Jason Stajich
• [Bioperl-l] $_ assignment question   Dave Howorth
• [Bioperl-l] Installation question   Douglas Joubert
• [Bioperl-l] $_ assignment question   Aaron J Mackey
• [Bioperl-l] problems with installing Bioperl on OSX   Madis Metsis
• [Bioperl-l] Primer3   Imtiaz KHAN
• [Bioperl-l] About Bio::DB::GenBank!   yaofx
• [Bioperl-l] $_ assignment question   Dave Howorth
• [Bioperl-l] problems with installing Bioperl on OSX   Jason Stajich
• [Bioperl-l] Primer3   Shawn Hoon
• [Bioperl-l] problems with installing Bioperl on OSX   Brian Osborne
• [Bioperl-l] problems with installing Bioperl on OSX   Christopher Cavnor
• [Bioperl-l] About Bio::DB::GenBank!   Jonathan Manning
• [Bioperl-l] problems with parsing hmmpfam   Sofia
• [Bioperl-l] Errors generated from example code in HOW-TO section   Hilmar Lapp
• [Bioperl-l] About Bio::DB::GenBank!   Hilmar Lapp
• [Bioperl-l] About Bio::DB::GenBank!   yaofx
• [Bioperl-l] Re: what up   bto_86 at gte.net
• [Bioperl-l] problems with parsing hmmpfam   Jason Stajich
• [Bioperl-l] about error messages!   yaofx
• [Bioperl-l] Extracting GenBank Information   Michael Hughes
• [Bioperl-l] Extracting GenBank Information   Leonardo Marino-Ramirez
• [Bioperl-l] Extracting subsequences from genbank files   Rolf Nimzyk
• [Bioperl-l] load_gff.pl question   Shin Enomoto
• [Bioperl-l] Bio::Graphics   Laurence Amilhat
• [Bioperl-l] XML -> Flat Query-Anchored & Identities   Fanteï Caujolle Yan
• [Bioperl-l] XML -> Flat Query-Anchored & Identities   simon andrews (BI)
• [Bioperl-l] BioPipe & LFS   Josh Lauricha
• [Bioperl-l] BioPipe & LFS   LAI Loong Fong
• [Bioperl-l] BioPipe & LFS   Brian Osborne
• [Bioperl-l] BioPipe & LFS   Josh Lauricha
• [Bioperl-l] Re: load_gff.pl question   Scott Cain
• [Bioperl-l] Re: Bioperl-l Digest, Vol 4, Issue 3   Scott Cain
• [Bioperl-l] BioPerl Installation   Lobvi Matamoros
• [Bioperl-l] GFF scripts   Koen van der Drift
• [Bioperl-l] Bio::Graphics   Wes Barris
• [Bioperl-l] Re: Bioperl-l Digest, Vol 4, Issue 3   Wes Barris
• [Bioperl-l] Re: load_gff.pl question   Shin Enomoto
• [Bioperl-l] get sequences over pubmed   jochen
• [Bioperl-l] GFF scripts   Brian Osborne
• [Bioperl-l] BioPerl Installation   yaofx
• [Bioperl-l] BioPerl Installation   Patrick De Marta
• [Bioperl-l] BioPerl Installation   Brian Osborne
• [Bioperl-l] BioPerl Installation   Brian Osborne
• [Bioperl-l] Protect your PC today   aa0iswoal42 at cspgroup.com
• [Bioperl-l] award-winning   a_rhodes2 at dell.com
• [Bioperl-l] Re: BioGraphics tutorial problem   Scott Cain
• [Bioperl-l] Re: load_gff.pl question   Scott Cain
• [Bioperl-l] Re: load_gff.pl question   Shin Enomoto
• [Bioperl-l] GFF scripts   Koen van der Drift
• [Bioperl-l] GFF scripts   Koen van der Drift
• [Bioperl-l] Re: hi   bkww at email.com
• [Bioperl-l] GFF scripts   Brian Osborne
• [Bioperl-l] bioperl meeting at GMOD meeting in Sept   Scott Cain
• [Bioperl-l] Will subseq give complement?   Gray, John
• [Bioperl-l] Will subseq give complement?   Gray, John
• [Bioperl-l] Re: BioGraphics tutorial problem   Scott Cain
• [Bioperl-l] Will subseq give complement?   Jason Stajich
• [Bioperl-l] bioperl meeting at GMOD meeting in Sept   Hilmar Lapp
• [Bioperl-l] bioperl meeting at GMOD meeting in Sept   Chris Mungall
• [Bioperl-l] Re: BioGraphics tutorial problem   Christopher Fields
• [Bioperl-l] why are you waiting   a_vogt2 at gaia.de
• [Bioperl-l] GFF scripts   Koen van der Drift
• [Bioperl-l] what up   beagle at email.com
• [Bioperl-l] economic woes?   bdsutton at yahoo.com
• [Bioperl-l] help needed, please   simabba at tin.it
• [Bioperl-l] most trusted antivirus   a_richard_noel2 at netscape.net
• [Bioperl-l] what are you waiting for   a_sidor2 at dell.com
• [Bioperl-l] most trusted antivirus solution   a_rivers2 at swbell.net
• installing scripts (was:Re: [Bioperl-l] GFF scripts)   Koen van der Drift
• installing scripts (was:Re: [Bioperl-l] GFF scripts)   Koen van der Drift
• [Bioperl-l] Bio::Tools::Run options   Josh Lauricha
• [Bioperl-l] Bio::DB::GenBank and proxy   William Kenworthy
• [Bioperl-l] ClusterIO Parsing of dbSNP: Possible bug   Johnny Amos
• [Bioperl-l] Bio::Tools::Run options   Jason Stajich
• installing scripts (was:Re: [Bioperl-l] GFF scripts)   Jason Stajich
• installing scripts (was:Re: [Bioperl-l] GFF scripts)   Koen van der Drift
• installing scripts (was:Re: [Bioperl-l] GFF scripts)   Jason Stajich
• installing scripts (was:Re: [Bioperl-l] GFF scripts)   Ewan Birney
• installing scripts (was:Re: [Bioperl-l] GFF scripts)   Ewan Birney
• installing scripts (was:Re: [Bioperl-l] GFF scripts)   Jason Stajich
• [Bioperl-l] question about SeqIO and BSML DTD   Susan Cassidy
• installing scripts (was:Re: [Bioperl-l] GFF scripts)   Koen van der Drift
• [Bioperl-l] Re: Bio::FPC   Yee Man Chan
• [Bioperl-l] ClusterIO Parsing of dbSNP: Possible bug   Allen Day
• [Bioperl-l] Parsing html blast output?   Wes Barris
• [Bioperl-l] Bio::Tools::Run::RemoteBlast: RID not found   Eric Miska
• [Bioperl-l] Parsing html blast output?   Edith Schlagenhauf
• [Bioperl-l] Bio::DB::GenBank and proxy   simon andrews (BI)
• installing scripts (was:Re: [Bioperl-l] GFF scripts)   Ewan Birney
• [Bioperl-l] ... Become free from debt for LIFE!! Read..90fdsanm   xjnbebljntud at msn.com
• installing scripts (was:Re: [Bioperl-l] GFF scripts)   Aaron J Mackey
• [Bioperl-l] Bio::DB::GenBank and proxy   William Kenworthy
• [Bioperl-l] Parsing html blast output?   Jason Stajich
• installing scripts (was:Re: [Bioperl-l] GFF scripts)   Brian Osborne
• [Bioperl-l] parsing BLAST html   Aaron J Mackey
• [Bioperl-l] Bio::DB::GenBank and proxy   simon andrews (BI)
• [Bioperl-l] Re: parsing BLAST html   Jason Stajich
• installing scripts (was:Re: [Bioperl-l] GFF scripts)   Brian Osborne
• [Bioperl-l] Bio::DB::GenBank and proxy   William Kenworthy
• [Bioperl-l] Re: parsing BLAST html   Sofia
• [Bioperl-l] problem with Graphics   Sean O'Brien
• [Bioperl-l] Help w/ AlignIO and consensus_iupac   gadbermd at earthlink.net
• [Bioperl-l] SeqIO BEGIN block kills Gbrowse   Mark Wilkinson
• [Bioperl-l] SeqIO BEGIN block kills Gbrowse   Jason Stajich
• [BioPerl] Re: [Bioperl-l] SeqIO BEGIN block kills Gbrowse   Mark Wilkinson
• [BioPerl] Re: [Bioperl-l] SeqIO BEGIN block kills Gbrowse   Mark Wilkinson
• [BioPerl] Re: [Bioperl-l] SeqIO BEGIN block kills Gbrowse   Jason Stajich
• installing scripts (was:Re: [Bioperl-l] GFF scripts)   Koen van der Drift
• [Bioperl-l] Cut your debt by up to 60 percent   zrgkigqtcxwx at msn.com
• [Bioperl-l] Help w/ AlignIO and consensus_iupac   Jason Stajich
• [Bioperl-l] Re: parsing BLAST html   Brian Osborne
• [Bioperl-l] SeqIO BEGIN block kills Gbrowse   Scott Cain
• [Bioperl-l] epcr to gff parser.   Philip MacMenamin
• [BioPerl] [Bioperl-l] SeqIO BEGIN block kills Gbrowse   Mark Wilkinson
• [Bioperl-l] epcr to gff parser.   Jason Stajich
• [Bioperl-l] Re: parsing BLAST html   Aaron J Mackey
• [Bioperl-l] Re: parsing BLAST html   Brian Osborne
• [Bioperl-l] Bio::DB::GFF problem   Matthias Wahl
• [Bioperl-l] the roundup (long)   Jason Stajich
• [Bioperl-l] question about SeqIO and BSML DTD   Jason Stajich
• [Bioperl-l] Installing Bioperl - Dependencies problem   Anelda Boardman
• [Bioperl-l] Installing Bioperl - Dependencies problem   Jason Stajich
• [Bioperl-l] Re: Bio::FPC   Jamie Hatfield
• [Bioperl-l] Padded position in Consensus sequence   Jayaprakash Rudraraju
• [Bioperl-l] Padded position in Consensus sequence   Jamie Hatfield
• [Bioperl-l] Padded position in Consensus sequence   Jayaprakash Rudraraju
• [Bioperl-l] Please help me with Footprinter   Ben Westover
• [Bioperl-l] question on installation   Jiang Qian
• [Bioperl-l] Please help me with Footprinter   Jason Stajich
• [Bioperl-l] question on installation   Josh Lauricha
• [Bioperl-l] the roundup (long)   Steve Chervitz
• [Bioperl-l] question on installation   Jason Stajich
• [Bioperl-l] problem with Graphics   Wes Barris
• [Bioperl-l] octamers search   Jimmy Fernandez
• [Bioperl-l] blast Bio::Tools::Run::StandAloneBlast BlastFindWords returned non-zero status   Guido Dieterich
• [Bioperl-l] blast Bio::Tools::Run::StandAloneBlast BlastFindWords returned non-zero status   Jason Stajich
• [Bioperl-l] t/DB test fails   Koen van der Drift
• [Bioperl-l] Bemusement with get_seq_by_gi in a CGI script   Mark Wilkinson
• [Bioperl-l] Bemusement with get_seq_by_gi in a CGI script   simon andrews (BI)
• [BioPerl] RE: [Bioperl-l] Bemusement with get_seq_by_gi in a CGI script   Mark Wilkinson
• [Bioperl-l] Bemusement with get_seq_by_gi in a CGI script   Jason Stajich
• [BioPerl] RE: [Bioperl-l] Bemusement with get_seq_by_gi in a CGI script   Mark Wilkinson
• [Bioperl-l] cgi script problem   Koen van der Drift
• [Bioperl-l] cgi script problem [solved]   Koen van der Drift
• [Bioperl-l] parser for GCG flavor of FASTA ?   Martin A. Hansen
• [Bioperl-l] cgi script problem   Jason Stajich
• [Bioperl-l] parser for GCG flavor of FASTA ?   Martin A. Hansen
• [Bioperl-l] parser for GCG flavor of FASTA ?   Jason Stajich
• [Bioperl-l] GFF to gene structure pictures   Andrew Ram
• [Bioperl-l] synteny   Andrew Ram
• [Bioperl-l] synteny   simon andrews (BI)
• [Bioperl-l] automated response   Martin Hirst
• [Bioperl-l] GFF to gene structure pictures   Jason Stajich
• [Bioperl-l] synteny   Jason Stajich
• [Bioperl-l] bioperl-db authors   Brian Osborne
• [Bioperl-l] Bio::Graphics::Panel, -spacing => 0 constructor problem.   Philip MacMenamin
• [Bioperl-l] Energy Storage   Flywheel
• [Bioperl-l] Energy Storage   Flywheel
• [Bioperl-l] Bio::SeachIO::Fasta problem   Martin A. Hansen
• [Bioperl-l] blastall parser   Eileen T. Bridge
• [Bioperl-l] Bio::SeachIO::Fasta problem   Aaron J Mackey
• [Bioperl-l] Bio::SeachIO::Fasta problem   Jason Stajich
• [Bioperl-l] Bio::SeachIO::Fasta problem   Douglas Joubert
• [Bioperl-l] Re: load_gff.pl question   Marcel van Batenburg
• [Bioperl-l] Re: Bio::FPC   Jamie Hatfield
• [Bioperl-l] Fwd: [Volunteer] submitting modules   James Freeman
• [Bioperl-l] Re: Bio::FPC   Jason Stajich
• [Bioperl-l] Fwd: [Volunteer] submitting modules   Jason Stajich
• [Bioperl-l] abott gff manipunation   Jason Stajich
• [Bioperl-l] Fwd: [Volunteer] submitting modules (PiseWorkflow.pm)   Catherine Letondal
• [Bioperl-l] abott gff manipunation   Magic Fang
• [Bioperl-l] Re: Bio::FPC   Brian Osborne
• [Bioperl-l] Re: Bio::FPC   Jamie Hatfield
• [Bioperl-l] about gff format to feature table format   Magic Fang
• [Bioperl-l] Re: Bio::FPC   Brian Osborne
• [Bioperl-l] Re: Bio::FPC   Ewan Birney
• [Bioperl-l] about gff format to feature table format   Magic Fang
• [Bioperl-l] remote blast   Sunil Saluja
• [Bioperl-l] Remote Blast   Sunil Saluja
• [Bioperl-l] Blast ridline changed? RemoteBlast seems to be failing...   Wiepert, Mathieu
• [Bioperl-l] remote blast   Wiepert, Mathieu
• [Bioperl-l] RemoteBlast failing?   Johnny Amos
• [Bioperl-l] RemoteBlast failing?   Wiepert, Mathieu
• [Bioperl-l] Bio::Tools::Run::RemoteBlast: RID not found   Sergey V. Orlov
• [Bioperl-l] Bio::Tools::Run::RemoteBlast: RID not found   Wiepert, Mathieu
• [Bioperl-l] Open-Bio server downtime and IP address changes scheduled for Tuesday September 2nd 2003   Chris Dagdigian
• [Bioperl-l] extract feature seq when split between 2 GenBank accessions   Charles Hauser
• [Bioperl-l] extract feature seq when split between 2 GenBank accessions   Jason Stajich
• [Bioperl-l] extract feature seq when split between 2 GenBank accessions   Charles Hauser
• [Bioperl-l] extract feature seq when split between 2 GenBank accessions   Jason Stajich
• [Bioperl-l] doing a 1.2.3 release   Jason Stajich
• [Bioperl-l] PiseWorkflow.pm   Catherine Letondal
• [Bioperl-l] Re: Bio::FPC   Jamie Hatfield
• [Bioperl-l] doing a 1.2.3 release   Ewan Birney
• [Bioperl-l] How do you add a consensus to AlignIO?   Wes Barris
• [Bioperl-l] How do you add a consensus to AlignIO?   Jason Stajich
• [Bioperl-l] How do you add a consensus to AlignIO?   Wes Barris
• [Bioperl-l] taxonomy and speices   Juguang Xiao
• [Bioperl-l] taxonomy and speices   Brian Osborne
• [Bioperl-l] Re: Bio::FPC   Brian Osborne
• [Bioperl-l] Re: Bio::FPC   Jamie Hatfield
• [Bioperl-l] Re: Bio::FPC   Brian Osborne
• [Bioperl-l] doing a 1.2.3 release   Jason Stajich
• [Bioperl-l] taxonomy and speices   Jason Stajich
• [Bioperl-l] doing a 1.2.3 release   Ewan Birney
• [Bioperl-l] doing a 1.2.3 release   Rob Edwards
• [Bioperl-l] doing a 1.2.3 release   Ewan Birney
• [Bioperl-l] doing a 1.2.3 release   Jason Stajich
• [Bioperl-l] bp_extract_feature_seq.pl : --feature CDS error   Charles Hauser
• [Bioperl-l] bp_extract_feature_seq.pl : --feature CDS error   Jason Stajich
• [Bioperl-l] Re: Smith-Waterman question   Yee Man Chan
• [Bioperl-l] aligning sequences with Bio::Tools::pSW   Joshua Bronson
• [Bioperl-l] How do you add a consensus to AlignIO?   Wes Barris
• [Bioperl-l] aligning sequences with Bio::Tools::pSW   Shawn Hoon
• [Bioperl-l] ace to msf format?   Wes Barris
• [Bioperl-l] aligning sequences with Bio::Tools::pSW   Aaron J Mackey
• [Bioperl-l] aligning sequences with Bio::Tools::pSW   william.j.burtle at gsk.com
• [Bioperl-l] aligning sequences with Bio::Tools::pSW   Brian Osborne
• [Bioperl-l] Bio::Graphics   Lincoln Stein
• [Bioperl-l] ace to msf format?   Brian Osborne
• [Bioperl-l] aligning sequences with Bio::Tools::pSW   Brian Osborne
• [Bioperl-l] aligning sequences with Bio::Tools::pSW   Brian Osborne
• [Bioperl-l] doing a 1.2.3 release   Lincoln Stein
• [Bioperl-l] aligning sequences with Bio::Tools::pSW   william.j.burtle at gsk.com
• [Bioperl-l] doing a 1.2.3 release   Ewan Birney
• [Bioperl-l] bugs on branch; tests on main trunk   Ewan Birney
• [Bioperl-l] EMBOSS Alignment program [was aligning sequences withBio::Tools::pSW]   Brian Osborne
• [Bioperl-l] aligning sequences with Bio::Tools::pSW   Brian Osborne
• [Bioperl-l] aligning sequences with Bio::Tools::pSW   Jason Stajich
• [Bioperl-l] doing a 1.2.3 release   Lincoln Stein
• [Bioperl-l] EMBOSS Alignment program [was aligning sequences with Bio::Tools::pSW]   Jason Stajich
• [Bioperl-l] Bio::Graphics   Christopher Fields
• [Bioperl-l] doing a 1.2.3 release   Jason Stajich
• [Bioperl-l] Bio::Graphics   Lincoln Stein
• [Bioperl-l] Problem with load_seqdatabase -> Redhat9 problem   avilella
• [Bioperl-l] Engineer   Resume
• [Bioperl-l] Engineer   Resume
• [Bioperl-l] ace to msf format?   Wes Barris
• [Bioperl-l] ace to msf format?   Jason Stajich

Last message date: Sun Aug 31 22:28:43 EST 2003
Archived on: Sun Aug 31 22:05:07 EST 2003

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