[Bioperl-l] about gff format to feature table format

Magic Fang fangl at genomics.org.cn
Tue Aug 26 13:10:11 EDT 2003


dear my colleagues
i have a gff format file, such as:
#Seq.   Source  Feature Start   End     Score   Strand  Phase   Group
CNS06C8G        GlimmerM        Terminal        160     228     1       -       0       Gene 1
CNS06C8G        GlimmerM        Internal        3771    3924    1       -       0       Gene 1
CNS06C8G        GlimmerM        Initial 5902    5915    1       -       1       Gene 1
CNS06C8G        GlimmerM        Initial 6330    6555    1       +       0       Gene 2
CNS06C8G        GlimmerM        Internal        6626    6706    1       +       1       Gene 2
CNS06C8G        GlimmerM        Internal        6913    7347    1       +       1       Gene 2
CNS06C8G        GlimmerM        Internal        7896    7975    1       +       1       Gene 2
CNS06C8G        GlimmerM        Internal        8131    8160    1       +       0       Gene 2
CNS06C8G        GlimmerM        Internal        12054   12113   1       +       0       Gene 2
CNS06C8G        GlimmerM        Internal        15857   16217   1       +       0       Gene 2
CNS06C8G        GlimmerM        Terminal        16377   16657   1       +       1       Gene 2
CNS06C8G        GlimmerM        Terminal        17607   17732   1       -       0       Gene 3
CNS06C8G        GlimmerM        Internal        17813   18361   1       -       0       Gene 3
CNS06C8G        GlimmerM        Initial 18659   18844   1       -       0       Gene 3
CNS06C8G        GlimmerM        Initial 19172   19268   1       +       0       Gene 4
can bioperl merge the entries belong to one gene to one sequence feature, when i use Bio::Tools::GFF?
thank you.




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