[Bioperl-l] cgi script problem

[Jason Stajich]

the apache running environment is different from your own user environment
so you need to add the /sw path to either the script or to your apache env
- the best way to do this will depend on whether or not you are running
mod_perl.

-jason

On Wed, 20 Aug 2003, Koen van der Drift wrote:

> Hi,
>
> To test my bioperl installation through fink on Mac OS X, I took one of
> the cgi scripts (frend), and put it in my local cgi-bin folder. When I
> run the script on localhost, I get the following error:
>
> [Wed Aug 20 21:59:52 2003] [error] [client 127.0.0.1] Premature end of
> script headers: /Users/koen/Sites/cgi-bin/frend
> Can't locate Bio/Graphics/Panel.pm in @INC (@INC contains:
> /System/Library/Perl/darwin /System/Library/Perl /Library/Perl/darwin
> /Library/Perl /Library/Perl /Network/Library/Perl/darwin
> /Network/Library/Perl /Network/Library/Perl .) at
> /Users/koen/Sites/cgi-bin/frend line 5.
> BEGIN failed--compilation aborted at /Users/koen/Sites/cgi-bin/frend
> line 5.
>
>
> Bioperl indeed is installed in the fink directory /sw which is not
> included in the @INC above. But, if I run perl -V, /sw is included in
> @INC:
>
>    @INC:
>      /sw/lib/perl5/5.8.0/darwin
>      /sw/lib/perl5/5.8.0
>      /sw/lib/perl5/darwin
>      /sw/lib/perl5
>      /System/Library/Perl/darwin
> ....
>
>
> I have other scripts in cgi-bin, and they work, so I know that apache
> is configured ok. I also run bptutorial, and that works fine too.
>
>
> Any suggestions how I can fix this?
>
>
> thanks,
>
>
> - Koen.
>
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>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu