[BioPerl] [Bioperl-l] SeqIO BEGIN block kills Gbrowse

[Mark Wilkinson]

Thanks for the heads-up.  I'll do that.

Sorry bio-perlers!  I didn't have the time/energy to look deeper than
the error message itself, which pointed to SeqIO.pm.

M

On Wed, 2003-08-13 at 07:24, Scott Cain wrote:
> Hi Mark,
> 
> I think this is a CGI.pm problem--Lincoln and I have gone back and forth
> about this, but I seem to remember that the problem was fixed with an
> update of CGI.pm.
> 
> Also, you might want to send/cc notes like this to the GBrowse list:
> gmod-gbrowse at lists.sourceforge.net.
> 
> Thanks,
> Scott
> 
> 
> --- Original Message ---
> Date: 12 Aug 2003 15:01:14 -0600
> From: Mark Wilkinson <markw at illuminae.com>
> Subject: [Bioperl-l] SeqIO BEGIN block kills Gbrowse
> To: bioperl-l at bioperl.org
> Message-ID: <1060722074.1709.106.camel at localhost.localdomain>
> Content-Type: text/plain
> 
> Hi all,
> 
> Just a heads-up that the eval in the BEGIN block of SeqIO.pm mucks-up
> the gbrowse CGI (apparently because the error message is printed to the
> screen before the CGI header).  I suppose this is something that is best
> fixed at the gbrowse end of the stick, but I thought I'd post a note
> about it here anyway.  It it doesn't look like it will be an easy thing
> to fix given the early point at which that line is going to execute...
> 
> M
> 
> -- 
> Mark Wilkinson <markw at illuminae.com>
> Illuminae
-- 
Mark Wilkinson <markw at illuminae.com>
Illuminae