[Bioperl-l] Re: Bio::FPC

[Jason Stajich]

For now, submit as a feature request to
http://bugzilla.open-bio.org/

Attach the code as a tarball after you have submitted the request.

A core dev will look it over and assuming all is well get you set up with
a CVS account.

-jason

On Mon, 25 Aug 2003, Jamie Hatfield wrote:

> Again, how do I go about submitting this?
>
> On Thu, 2003-08-14 at 09:34, Jamie Hatfield wrote:
> > Yes, actually.  We are just now finishing up the fpc parser.  I was
> > planning on soon asking the group how I would go about submitting it?
> > It consists of 5 modules that we have put in the MapIO and Map
> > namespaces.
> > Bio::MapIO::fpc.pm
> > Bio::Map::physical.pm
> > Bio::Map::fpcmarker.pm  (sorry, but marker doesn't work)
> > Bio::Map::clone.pm
> > Bio::Map::contig.pm
> >
> > If you want to see how this object might be used, check out
> > http://www.genome.arizona.edu/software/fpc/biofpc/index.html
> >
> > You'll see there documentation for the modules, and a few test cases or
> > example usages.
> >
> > Also, we are trying to make a generic converter to let you load in a fpc
> > file and generate the necessary GFF for GBrowse to display the fpc map.
> > It's a quite simple display of the clones, markers, and contigs, but
> > maybe that will be usefull as an alternative to WebFPC (a java view only
> > version of fpc).  It works for us, but might not work for everybody.  We
> > should be able to patch it up, though, if it's missing features.
> >
> > So, anyways, if somebody can let me know how to go about submitting it,
> > we'll start the process.  I looked through the FAQ and it basically said
> > to just post information if you have a module that you would like to
> > contribute, so, here's the information.
> >
> > Jamie
>
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu