[Bioperl-l] Bio::Tools::Run::RemoteBlast: RID not found

[Wiepert, Mathieu]

Hi,

Unfortunately, that can't be the fix, since NCBI has said that the structure of the RID, with '.BLASTQ3' appended is not to be relied upon.  How much it is not to be relied upon has yet to be determined?

But, I think it is fair to say that 

$RIDLINE = 'RID\s+=\s+(\S+)';

might work.  Or is that too broad?  I would think all contiguous non-white space after the = would be OK.

-mat

-----Original Message-----
From: Sergey V. Orlov [mailto:serge at iem.sp.ru]
Sent: Wednesday, August 27, 2003 8:16 AM
To: bioperl-l at portal.open-bio.org
Subject: [Bioperl-l] Bio::Tools::Run::RemoteBlast: RID not found


Hi, I had got the same problem. It's caused by wrong regular expression
on line 168 in RemoteBlast.pm module.
Just change
$RIDLINE = 'RID\s+=\s+(\d+-\d+-\d+)';
to something like
$RIDLINE = 'RID\s+=\s+(\d+-\d+-\d+\.BLASTQ3)';
and it'll work.
Good luck, Serge.

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