[Bioperl-l] question on installation
Jiang Qian
jiang.qian at jhmi.edu
Thu Aug 14 16:07:25 EDT 2003
Hi,
I am new on BioPerl. I installed the system on a Linux machine through
the procedure of "perl Makefiel.PL" => "make" => "make test" => "make
install". Everything seems okay. But when I tried the script from
tutorial,
use Bio::Perl;
$seq_object = get_sequence('swissprot',"ROA1_HUMAN");
write_sequence(">roa1.fasta",'fasta',$seq_object);
I got the error message " Your system does not have IO::String installed
so the DB retrieval method is not available at
/usr/lib/perl5/site_perl/5.6.1/Bio/Perl.pm line 466
Bio::Perl::get_sequence('swissprot', 'ROA1_HUMAN') called at
./try_bioperl.pl line 7".
What's the problem? Anyboday can help me with this? Thanks,
-Jiang
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