[Bioperl-l] Re: Bio::FPC

[Jamie Hatfield]

Again, how do I go about submitting this?

On Thu, 2003-08-14 at 09:34, Jamie Hatfield wrote:
> Yes, actually.  We are just now finishing up the fpc parser.  I was
> planning on soon asking the group how I would go about submitting it? 
> It consists of 5 modules that we have put in the MapIO and Map
> namespaces.
> Bio::MapIO::fpc.pm
> Bio::Map::physical.pm
> Bio::Map::fpcmarker.pm  (sorry, but marker doesn't work)
> Bio::Map::clone.pm
> Bio::Map::contig.pm
> 
> If you want to see how this object might be used, check out
> http://www.genome.arizona.edu/software/fpc/biofpc/index.html
> 
> You'll see there documentation for the modules, and a few test cases or
> example usages.
> 
> Also, we are trying to make a generic converter to let you load in a fpc
> file and generate the necessary GFF for GBrowse to display the fpc map. 
> It's a quite simple display of the clones, markers, and contigs, but
> maybe that will be usefull as an alternative to WebFPC (a java view only
> version of fpc).  It works for us, but might not work for everybody.  We
> should be able to patch it up, though, if it's missing features.
> 
> So, anyways, if somebody can let me know how to go about submitting it,
> we'll start the process.  I looked through the FAQ and it basically said
> to just post information if you have a module that you would like to
> contribute, so, here's the information.
> 
> Jamie