2002-January Archives by Thread

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Starting: Tue Jan 1 12:13:16 2002
Ending: Thu Jan 31 21:12:48 2002
Messages: 243

• [Bioperl-l] Naming consistency and Bioperl future search result parsing   Andrew Dalke
  • [Bioperl-l] Naming consistency and Bioperl future search result parsing   Jason Stajich
    • [Bioperl-l] Naming consistency and Bioperl future search result parsing   Jeffrey Chang
• [Bioperl-l] Naming consistency and Bioperl future search resultparsing   Andrew Dalke
  • [Bioperl-l] Naming consistency and Bioperl future search resultparsing   Jason Stajich
• [Bioperl-l] Naming consistency and Bioperl future search result parsing   Andrew Dalke
• [Bioperl-l] Naming consistency and Bioperl future searchresultparsing   Andrew Dalke
• [Bioperl-l] Bioperl-Live documentation - comment and bug report   Liu, Mingyi
• [Bioperl-l] Moved 0.9.2 to DIST area on ftp site; plan for 0.9.3   Ewan Birney
• [Bioperl-l] OS X installation instructions   Steven Cannon
  • [Bioperl-l] OS X installation instructions   chris dagdigian
    • [Bioperl-l] OS X installation instructions   Steven Cannon
• [Bioperl-l] Grrrr. Another subtle overloading bug ...   Ewan Birney
  • [Bioperl-l] Grrrr. Another subtle overloading bug ...   Hilmar Lapp
    • [Bioperl-l] Grrrr. Another subtle overloading bug ...   Ewan Birney
    • [Bioperl-l] Grrrr. Another subtle overloading bug ...   Lincoln Stein
  • [Bioperl-l] Grrrr. Another subtle overloading bug ...   Aaron J Mackey
    • [Bioperl-l] Grrrr. Another subtle overloading bug ...   Ewan Birney
      • [Bioperl-l] Grrrr. Another subtle overloading bug ...   Aaron J Mackey
      • [Bioperl-l] Grrrr. Another subtle overloading bug ...   Ewan Birney
      • [Bioperl-l] Grrrr. Another subtle overloading bug ...   Hilmar Lapp
      • [Bioperl-l] Grrrr. Another subtle overloading bug ...   Lincoln Stein
    • [Bioperl-l] Grrrr. Another subtle overloading bug ...   Lincoln Stein
      • [Bioperl-l] Grrrr. Another subtle overloading bug ...   Ewan Birney
• [Bioperl-l] 0.9 testing series --- Volunteers   Ewan Birney
• [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1048   Heikki Lehvaslaiho
• [Bioperl-l] p-value, e-value   Jason Stajich
  • [Bioperl-l] p-value, e-value   Brian Osborne
    • [Bioperl-l] p-value, e-value   Ewan Birney
      • [Bioperl-l] p-value, e-value   Jonathan Epstein
      • [Bioperl-l] p-value, e-value   Ian Korf
  • [Bioperl-l] p-value, e-value   Hilmar Lapp
• [Bioperl-l] Grrrr. Another subtle overloading bug ...   Chervitz, Steve
  • [Bioperl-l] Grrrr. Another subtle overloading bug ...   Ewan Birney
  • [Bioperl-l] Grrrr. Another subtle overloading bug ...   Lincoln Stein
• [Bioperl-l] new Search objects   Jason Stajich
  • [Bioperl-l] new Search objects   Ewan Birney
• [Bioperl-l] Bug fixed --- all tests pass   Ewan Birney
• [Bioperl-l] help   Heikki Lehvaslaiho
• [Bioperl-l] p-value, e-value   Steve Chervitz
  • [Bioperl-l] p-value, e-value   Aaron J Mackey
• [Bioperl-l] Tests - Can other people report make test results:   Ewan Birney
  • [Bioperl-l] Tests - Can other people report make test results:   Heikki Lehvaslaiho
    • [Bioperl-l] Tests - Can other people report make test results:   Leonardo Marino-Ramirez
      • [Bioperl-l] Tests - Can other people report make test results:   Ewan Birney
      • [Bioperl-l] Tests - Can other people report make test results:   Leonardo Marino-Ramirez
      • [Bioperl-l] Tests - Can other people report make test results:   Ewan Birney
      • [Bioperl-l] Tests - Can other people report make test results:   Jason Stajich
      • [Bioperl-l] bioperl-live test results for openbsd   chris dagdigian
    • [Bioperl-l] Tests - Can other people report make test results:   Ewan Birney
      • [Bioperl-l] Tests - Can other people report make test results:   Heikki Lehvaslaiho
      • [Bioperl-l] Tests - Can other people report make test results:   Jason Stajich
      • [Bioperl-l] Tests - Can other people report make test results:   Heikki Lehvaslaiho
      • [Bioperl-l] Tests - Can other people report make test results:   Jason Stajich
  • [Bioperl-l] Tests - Can other people report make test results:   Gert Thijs
  • [Bioperl-l] Tests - Can other people report make test results:   Nicolas Joly
  • [Bioperl-l] Tests - Can other people report make test results:   Mark Hoebeke
• [Bioperl-l] StandAloneBlast, TCoffee   Ewan Birney
  • [Bioperl-l] StandAloneBlast, TCoffee   Jason Stajich
• [Bioperl-l] What to do with the DBGFF tests...   Ewan Birney
  • [Bioperl-l] Re: What to do with the DBGFF tests...   Lincoln Stein
• [Bioperl-l] guessing molecule type   Andrea Schafferhans
• [Bioperl-l] bioperl-live make on Irix 6.5   Kris Boulez
  • [Bioperl-l] Re: bioperl-live make on Irix 6.5   Kris Boulez
• [Bioperl-l] empty files   Jason Stajich
• [Bioperl-l] linking errors in pod documentation   Heikki Lehvaslaiho
• [Bioperl-l] Looking good.   Ewan Birney
  • [Bioperl-l] Looking good.   Kris Boulez
  • [Bioperl-l] Looking good.   lp1@sanger.ac.uk
  • [Bioperl-l] Looking good.   Brian Osborne
    • [Bioperl-l] Looking good.   Ewan Birney
      • [Bioperl-l] Looking good.   Brian Osborne
  • [Bioperl-l] Looking good.   Jason Stajich
  • [Bioperl-l] Looking good.   Steve Chervitz
    • [Bioperl-l] Looking good.   Heikki Lehvaslaiho
• [Bioperl-l] setup standalong blast to work with bioperl   William Hsiao
  • [Bioperl-l] setup standalong blast to work with bioperl   chris dagdigian
• [Bioperl-l] nomail   John Okyere
• [Bioperl-l] t_cofee tests   Jason Stajich
  • [Bioperl-l] clustalw/t_cofee tests   Jason Stajich
    • [Bioperl-l] clustalw/t_cofee tests   Ewan Birney
      • [Bioperl-l] clustalw/t_cofee tests   Jason Stajich
  • [Bioperl-l] t_cofee tests   Heikki Lehvaslaiho
    • [Bioperl-l] clustalw tests   Heikki Lehvaslaiho
• [Bioperl-l] Looking good - SYNOPSIS code   lp1@sanger.ac.uk
• [Bioperl-l] Bioperl Bundle installation errors, please help   William Hsiao
• [Bioperl-l] Grrrr. Another subtle overloading bug ...   Steve Chervitz
  • [Bioperl-l] Grrrr. Another subtle overloading bug ...   Ewan Birney
• [Bioperl-l] Pise/bioperl   Jason Stajich
  • [Bioperl-l] Pise/bioperl   Catherine Letondal
    • [Bioperl-l] Pise/bioperl   Jason Stajich
  • [Bioperl-l] Pise/bioperl   Aaron J Mackey
    • [Bioperl-l] Pise/bioperl   Catherine Letondal
• [Bioperl-l] writing PDB format from BioPerl   Kris Boulez
  • [Bioperl-l] writing PDB format from BioPerl   Ed Green
    • [Bioperl-l] writing PDB format from BioPerl   Kris Boulez
• [Bioperl-l] all tests pass on head   Heikki Lehvaslaiho
  • [Bioperl-l] all tests pass on head   Nicolas Joly
    • [Bioperl-l] all tests pass on head   Nicolas Joly
  • [Bioperl-l] Re: all tests pass on head   Steve Chervitz
• [Bioperl-l] make test on Mac OS X   David Block
  • [Bioperl-l] make test on Mac OS X   Todd Richmond
• [Bioperl-l] Perl / BioPerl question about tasking and threading   Bob Mangold
  • [Bioperl-l] Perl / BioPerl question about tasking and threading   Aaron J Mackey
  • [Bioperl-l] Perl / BioPerl question about tasking and threading   Nirav Merchant
    • [Bioperl-l] Bio::Index::Fasta vs Bio::DB::Fasta   Lincoln Stein
      • [Bioperl-l] Bio::Index::Fasta vs Bio::DB::Fasta   Ewan Birney
      • [Bioperl-l] Bio::Index::Fasta vs Bio::DB::Fasta   Tony Cox
      • [Bioperl-l] Bio::Index::Fasta vs Bio::DB::Fasta   Ewan Birney
      • [Bioperl-l] Bio::Index::Fasta vs Bio::DB::Fasta   Lincoln Stein
      • [Bioperl-l] Bio::Index::Fasta vs Bio::DB::Fasta   Lincoln Stein
      • [Bioperl-l] Bio::Index::Fasta vs Bio::DB::Fasta   Ewan Birney
• [Bioperl-l] SearchIO - tiny bug / verbosity inheritance   JDiggans@genelogic.com
  • [Bioperl-l] SearchIO - tiny bug / verbosity inheritance   Jason Stajich
• [Bioperl-l] bioperl bio::db::blast test   Chen Ming
• [Bioperl-l] 0.9.3 up --- time for more testing etc.   Ewan Birney
• [Bioperl-l] The most cost-effective marketing tool   Direct email service
• [Bioperl-l] =?iso-8859-1?Q?New=20code=20?=   Chris Mungall
  • [Bioperl-l] =?iso-8859-1?Q?New=20code=20?=   Ewan Birney
• [Bioperl-l] GenericHSP and SimpleAlign   Jason Stajich
• [Bioperl-l] perl Makefile.pl   Brian J. Gilmartin
  • [Bioperl-l] perl Makefile.pl   Phillip Lord
  • [Bioperl-l] perl Makefile.pl   Brian Osborne
    • [Bioperl-l] perl Makefile.pl   Chris Devers
• [Bioperl-l] RefSeq   Heikki Lehvaslaiho
• [Bioperl-l] BUG! In RangeI! grrr....   Elia Stupka
  • [Bioperl-l] BUG! In RangeI! grrr....   Ewan Birney
  • [Bioperl-l] BPlite percent_id bug   Jerm
• [Bioperl-l] GenericHSP and SimpleAlign   Jason Stajich
• [Bioperl-l] cvs[checkout aborted]: cannot make directory bioperl-live/scripts/Bio::DB::GFF:   RjGrimaila@aol.com
  • [Bioperl-l] cvs[checkout aborted]: cannot make directory bioperl-live/scripts/Bio::DB::GFF:   Jason Stajich
    • [Bioperl-l] cvs[checkout aborted]: cannot make directory bioperl-live/scripts/Bio::DB::GFF:   Lincoln Stein
    • [Bioperl-l] cvs[checkout aborted]: cannot make directory bioperl-live/scripts/Bio::DB::GFF:   Lincoln Stein
      • [Bioperl-l] cvs[checkout aborted]: cannot make directorybioperl-live/scripts/Bio::DB::GFF:   jfreeman
      • [Bioperl-l] cvs[checkout aborted]: cannot make directorybioperl-live/scripts/Bio::DB::GFF:   Jason Stajich
• [Bioperl-l] WebCVS   Elia Stupka
• [Bioperl-l] error/warning messages while using pSW.pm   Simon Chan
  • [Bioperl-l] error/warning messages while using pSW.pm   Jason Stajich
  • [Bioperl-l] error/warning messages while using pSW.pm   Ewan Birney
• [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1061   Jason Stajich
• [Bioperl-l] blast error (ncbiapi [000.000])   William Hsiao
  • [Bioperl-l] blast error (ncbiapi [000.000])   Jurgen Pletinckx
• [Bioperl-l] BPlite report->query return only partial name   William Hsiao
  • [Bioperl-l] BPlite report->query return only partial name   Elia Stupka
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1065 (fwd)   Jason Stajich
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1066 (fwd)   Jason Stajich
  • [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1066 (fwd)   Steven Cannon
• [Bioperl-l] tempfiles/tempdirs   Jason Stajich
  • [Bioperl-l] tempfiles/tempdirs   Lincoln Stein
• [Bioperl-l] application   John fang
• [Bioperl-l] One hell of a bug hunt!   Elia Stupka
  • [Bioperl-l] Re: One hell of a bug hunt!   Ewan Birney
    • [Bioperl-l] Re: One hell of a bug hunt!   Elia Stupka
      • [Bioperl-l] Re: One hell of a bug hunt!   Ewan Birney
• [Bioperl-l] Bio/Tools/SwissProtParser.pm   Ewan Birney
• [Bioperl-l] Writing genbank files   David Waring
  • [Bioperl-l] Writing genbank files   Ewan Birney
• [Bioperl-l] RE: [Biojava-l] Writing genbank files   Dickson, Mike
• [Bioperl-l] Writing genbank files   Andrew Dalke
• [Bioperl-l] Writing genbank files   Andrew Dalke
• [Bioperl-l] NCBI GenBank web retrieval   Jason Stajich
  • [Bioperl-l] NCBI GenBank web retrieval   dalke@xebte.pair.com
  • [Bioperl-l] NCBI GenBank web retrieval   Chris Devers
  • [Bioperl-l] NCBI GenBank web retrieval   Lincoln Stein
• [Bioperl-l] NCBI GenBank web retrieval   Josiah Altschuler
  • [Bioperl-l] NCBI GenBank web retrieval   Jason Stajich
• [Bioperl-l] Bio::DB::GFF/Bio::DB::Fasta   Lincoln Stein
• [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1065   Heikki Lehvaslaiho
• [Bioperl-l] embl format output from Bio::PrimarySeq   Heikki Lehvaslaiho
• [Bioperl-l] COG software?   Rick Westerman
  • [Bioperl-l] COG software?   Jason Stajich
    • [Bioperl-l] COG software?   Paul Gordon
  • [Bioperl-l] COG software?   Rick Westerman
  • [Bioperl-l] COG software?   Fernan Aguero
    • [Bioperl-l] COG software?   Rick Westerman
    • [Bioperl-l] COG software?   Rick Westerman
• [Bioperl-l] feature table definitions   Andrew Dalke
• [Bioperl-l] help needed: EXCEPTION error   Beth Kidd
  • [Bioperl-l] help needed: EXCEPTION error   Jason Stajich
• [Bioperl-l] Re:   wateraid
• [Bioperl-l] Report to Recipient(s)   QuinceOrchard/Genelogic%GENELOGIC@genelogic.com
• [Bioperl-l] Report to Recipient(s)   RTPSMTP01@bd.com
• [Bioperl-l] running BLAST locally   Simon Chan
  • [Bioperl-l] running BLAST locally   Jason Stajich
• [Bioperl-l] bptutorial problems   seth redmond
• [Bioperl-l] Re: Running BLAST locally   Simon Chan
  • [Bioperl-l] Re: Running BLAST locally   Jason Stajich
  • [Bioperl-l] Re: Running BLAST locally   Brian Osborne
• [Bioperl-l] Retrieve Tissue Information   Tirza Doniger
• [Bioperl-l] bioperl-db: methods to get sequence version   Heikki Lehvaslaiho
• [Bioperl-l] Parse BLAST report using BPlite   Simon Chan
  • [Bioperl-l] Parse BLAST report using BPlite   Jason Stajich
• [Bioperl-l] Strange BioPerl/Perl problem!   Lynn Stevens
  • [Bioperl-l] Strange BioPerl/Perl problem!   Jason Stajich
  • [Bioperl-l] Strange BioPerl/Perl problem!   Brian Osborne
• [Bioperl-l] NCBI GenBank web retrieval   Josiah Altschuler
  • [Bioperl-l] NCBI GenBank web retrieval   Lincoln Stein
    • [Bioperl-l] NCBI GenBank web retrieval   Raphael Almeria
• [Bioperl-l] NCBI GenBank web retrieval   Jason Stajich
• [Bioperl-l] exonerate and crossmatch: Where are you?!   Simon Chan
• [Bioperl-l] bioperl bug (fwd)   Elia Stupka
• [Bioperl-l] Genomic Structure   Alam Intikhab
• [Bioperl-l] RE: exonerate and crossmatch: Where are you?!   Brian Desany
• [Bioperl-l] Intron Exons   Alam Intikhab
• [Bioperl-l] Intron Exons   Alam Intikhab
• [Bioperl-l] online blog and pictures from the Open Bio Hackathon & OReilly Bioinformatics Conference   chris dagdigian
• [Bioperl-l] problem with SeqIO.pm   Simon Chan
  • [Bioperl-l] problem with SeqIO.pm   Jason Stajich
  • [Bioperl-l] problem with SeqIO.pm   Ewan Birney
  • [Bioperl-l] problem with SeqIO.pm   Brian Osborne
    • [Bioperl-l] problem with SeqIO.pm   Ewan Birney
• [Bioperl-l] need help, lib problem   Hao Liu
• [Bioperl-l] Re: blast.pl parsing   Seth Redmond
  • [Bioperl-l] Re: blast.pl parsing   Jason Stajich
  • [Bioperl-l] Re: blast.pl parsing   Steve Chervitz
• [Bioperl-l] error when doing example 1.2   Lihn, Horng-Twu
  • [Bioperl-l] error when doing example 1.2   Jason Stajich
• [Bioperl-l] Jason and Ewan's TODO list   Ewan Birney
  • [Bioperl-l] Jason and Ewan's TODO list   niranjan
    • [Bioperl-l] Jason and Ewan's TODO list   Ewan Birney
  • [Bioperl-l] Jason and Ewan's TODO list   Brian Osborne
    • [Bioperl-l] Jason and Ewan's TODO list   Ewan Birney
      • [Bioperl-l] Jason and Ewan's TODO list   Brian Osborne
  • [Bioperl-l] Jason and Ewan's TODO list   Hilmar Lapp
    • [Bioperl-l] Jason and Ewan's TODO list   Ewan Birney
• [Bioperl-l] re: blast parsing   Neil Saunders
  • [Bioperl-l] re: blast parsing   Ewan Birney
  • [Bioperl-l] re: blast parsing   Hilmar Lapp
• [Bioperl-l] why Bio::DB::Genebank failed?   Jinhua Wang
  • [Bioperl-l] why Bio::DB::Genebank failed?   Jason Stajich
• [Bioperl-l] Modify / Delete features from Bio::Seq object?   simon andrews (BI)
  • [Bioperl-l] Modify / Delete features from Bio::Seq object?   Brian Osborne
    • [Bioperl-l] Modify / Delete features from Bio::Seq object?   Ewan Birney
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1073 (fwd)   Jason Stajich
• [Bioperl-l] (no subject)   M. Caribe
  • [Bioperl-l] (no subject)   Jason Stajich
• [Bioperl-l] SeqIO problems when reading Ensembl files   simon andrews (BI)
• [Bioperl-l] (no subject)   gayatri ganesh
• [Bioperl-l] (no subject)   gayatri ganesh
  • [Bioperl-l] (no subject)   Jason Stajich
• [Bioperl-l] Can someone take a look at this ensembl script?   Tomso.Daniel
  • [Bioperl-l] Can someone take a look at this ensembl script?   Ewan Birney
• [Bioperl-l] A second ensembl issue rears its head . . .   Tomso.Daniel

Last message date: Thu Jan 31 21:12:48 2002
Archived on: Thu Jan 31 16:06:03 2002

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