[Bioperl-l] Bio::DB::GFF/Bio::DB::Fasta

[Lincoln Stein]

Hi,

I've updated the Bio::DB::GFF modules so as to remove their dependency
on Bio::DB::Fasta.  (I figured out how to store 100 megabyte DNAs into
mysql databases and seek to an arbitrary base pair at 50 megs without
too much overhead.)

The next step will be to replace Bio::DB::Fasta with a shallow shell
that calls into Bio::Index::Fasta so that Bio::DB::Fasta can be
removed.

Lincoln

-- 
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Lincoln D. Stein                           Cold Spring Harbor Laboratory
lstein@cshl.org			                  Cold Spring Harbor, NY
Positions available at my lab: see http://stein.cshl.org/#hire
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