[Bioperl-l] Tests - Can other people report make test results:

[Jason Stajich]

investigating...

On Wed, 9 Jan 2002, Heikki Lehvaslaiho wrote:

> Heikki Lehvaslaiho wrote:
> >
> > Ewan Birney wrote:
> > >
> > > Thanks Heikki. Any chance of tracking down this clustalw failing bug. Off
> > > hand it might be related to my TCoffee bug about it not running. Hmmm...
> >
> > I'll try.
>
> The problem seems to be in Bio::Root::IO, possibly in method tempfile, but I
> can not figure out what exactly is going wrong. The error is caused by
> clustalw not being passed a valid temporary filename as a command line
> argument. This happens only if File::Temp module is present in the system.
> The fallback code in Bio::Root::IO works as it should.
>
> Jason, could you please have a look?
>
> 	-Heikki
>
>

-- 
Jason Stajich
Duke University
jason@cgt.mc.duke.edu