[Bioperl-l] StandAloneBlast, TCoffee

[Jason Stajich]

On Tue, 8 Jan 2002, Ewan Birney wrote:

>
>
> In StandAloneBlast, my machine has blastall but does not have ecoli.nt. I
> am now testing for ecoli.nt existing and if not, skipping, but maybe i
> should root around in $BLASTDB as well.
>
> Jason - is StandAloneBlast.t yours? Any views?

Peter and I  - I see your changes and they make sense - I'll do a run
through on solaris and IRIX later today.  0.9.3 out by end of the week
sounds fine.

>
>
>
> In TCoffee --- we actually have TCoffee installed on our machine, and I
> get this error from the command line
>
> ecs1g[birney]121: t_coffee -in=Xblosum,t/data/cysprot.fa -output=gcg
> -ktuple=3 -outfile=/tmp/olId8OC9mp -quiet
>
>
> Abnormal Termination
> Please report the fault to: cedric.notredame@europe.com, Thank you
>
>
>
>
> repeated --- Peter - have you seen this error? I can report to Cedric if
> you like... (Peter - does the TCoffee test work for you at the moment)
>
>
>
>
> TCoffee is now the only test failing
>
>
I'll give a shot - I had things working fine for me on RH 7.1 last week.
>
>
> -----------------------------------------------------------------
> Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
> <birney@ebi.ac.uk>.
> -----------------------------------------------------------------
>
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-- 
Jason Stajich
Duke University
jason@cgt.mc.duke.edu