[Bioperl-l] StandAloneBlast, TCoffee

[Ewan Birney]

In StandAloneBlast, my machine has blastall but does not have ecoli.nt. I
am now testing for ecoli.nt existing and if not, skipping, but maybe i
should root around in $BLASTDB as well. 

Jason - is StandAloneBlast.t yours? Any views?



In TCoffee --- we actually have TCoffee installed on our machine, and I
get this error from the command line 

ecs1g[birney]121: t_coffee -in=Xblosum,t/data/cysprot.fa -output=gcg
-ktuple=3 -outfile=/tmp/olId8OC9mp -quiet


Abnormal Termination
Please report the fault to: cedric.notredame@europe.com, Thank you




repeated --- Peter - have you seen this error? I can report to Cedric if
you like... (Peter - does the TCoffee test work for you at the moment)




TCoffee is now the only test failing




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Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
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