2000-September Archives by Thread

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Starting: Wed Dec 31 19:00:00 1969
Ending: Sat Sep 30 13:09:18 2000
Messages: 396

• [Bioperl-l] wiki   Ewan Birney
• [Bioperl-l] Bug hunt; Course   Ewan Birney
• [Bioperl-l] genpept/swiss   Hilmar Lapp
  • [Bioperl-l] genpept/swiss   Ewan Birney
    • [Bioperl-l] genpept/swiss   Hilmar Lapp
      • [Bioperl-l] genpept/swiss   Ewan Birney
  • [Bioperl-l] genpept/swiss   Arlin Stoltzfus
    • [Bioperl-l] genpept/swiss   Ewan Birney
• [Bioperl-l] genpept/swiss   Andrew Dalke
  • [Bioperl-l] genpept/swiss   Hilmar Lapp
    • [Bioperl-l] genpept/swiss   Kris Boulez
• [Bioperl-l] Bug hunt; Course   Gatherer, D. (Derek)
  • [Bioperl-l] Bug hunt; Course   Ewan Birney
• [Bioperl-l] genpept/swiss   Andrew Dalke
• [Bioperl-l] genpept/swiss   hilmar.lapp@pharma.Novartis.com
  • [Bioperl-l] genpept/swiss   Ewan Birney
  • [Bioperl-l] genpept/swiss   Kris Boulez
• [Bioperl-l] genpept/swiss   hilmar.lapp@pharma.Novartis.com
  • [Bioperl-l] genpept/swiss   Ewan Birney
• [Bioperl-l] RE: ORF finder   hilmar.lapp@pharma.Novartis.com
• [Bioperl-l] cvs stuff   Ewan Birney
• [Bioperl-l] bug fixes   Jason Stajich
• [Bioperl-l] genpept/swiss   Andrew Dalke
• [Bioperl-l] RE: ORF finder   Gatherer, D. (Derek)
• [Bioperl-l] FW: ORF finder   Gatherer, D. (Derek)
  • [Bioperl-l] FW: ORF finder   Hilmar Lapp
• AW: [Bioperl-l] xml sequence download from ncbi   Sigmund, Ralf
• [Bioperl-l] genpept/swiss   Andrew Dalke
• [Bioperl-l] xml sequence download from ncbi   Geer, Lewis (NLM)
• [Bioperl-l] "SeqIO-like" interface for alignment objects   Peter Schattner
  • [Bioperl-l] "SeqIO-like" interface for alignment objects   Ewan Birney
    • [Bioperl-l] Need info re Prodom & Stockholm formats and univaln.t2   Peter Schattner
      • [Bioperl-l] Need info re Prodom & Stockholm formats and univaln.t2   Kevin Howe
      • [Bioperl-l] Need info re Prodom & Stockholm formats and univaln.t2   Georg Fuellen
      • [Bioperl-l] Need info re Prodom & Stockholm formats and univaln.t2   Florence Servant
• [Bioperl-l] Add my e-mail to your mailing list   Berkovich Eli
• [Bioperl-l] wiki   Jeffrey Chang
  • [Bioperl-l] wiki   Ewan Birney
  • [Bioperl-l] wiki   Johann Visagie
    • [Bioperl-l] wiki   Ewan Birney
• [Bioperl-l] SeqAnal.pm, Prediction parsers   Hilmar Lapp
  • [Bioperl-l] SeqAnal.pm, Prediction parsers   Ewan Birney
• [Bioperl-l] swiss fix   Jason Stajich
  • [Bioperl-l] swiss fix   Ewan Birney
• [Bioperl-l] SeqAnal.pm, Prediction parsers   hilmar.lapp@pharma.Novartis.com
  • [Bioperl-l] SeqAnal.pm, Prediction parsers   Ewan Birney
  • [Bioperl-l] SeqAnal.pm, Prediction parsers   Lorenz Pollak
    • [Bioperl-l] SeqAnal.pm, Prediction parsers   Hilmar Lapp
• [Bioperl-l] new interfaces, classes   Jason Stajich
• [Bioperl-l] Finding significant hits with BPlite   gert thijs
  • [Bioperl-l] Finding significant hits with BPlite   Hilmar Lapp
• [Bioperl-l] _readline() in SeqIO.pm   Hilmar Lapp
• [Bioperl-l] Another implementation   David Block
  • [Bioperl-l] Another implementation   Ewan Birney
    • [Bioperl-l] Another implementation   David Block
      • [Bioperl-l] Another implementation   Ewan Birney
      • [Bioperl-l] Another implementation   J. H. Park
      • [Bioperl-l] Another implementation   David Block
      • [Bioperl-l] Another implementation   J. H. Park
• [Bioperl-l] Hi perl/BioTk   J. H. Park
• [Bioperl-l] Bio::Tools::AnalysisResult   Hilmar Lapp
• [Bioperl-l] t/Genpred.t   Hilmar Lapp
• [Bioperl-l] A new Perl module for Chemistry   Maksim Khrapov
  • [Bioperl-l] Re: A new Perl module for Chemistry   Maksim Khrapov
• [Bioperl-l] 0.6.2 release possibility...   Ewan Birney
  • [Bioperl-l] 0.6.2 release possibility...   Jason Stajich
• [Bioperl-l] Bio::Tools::Blast::HTML question   Zhao, David [PRI]
• [Bioperl-l] Fasta Qual files   Brian A. Desany, Ph.D.
  • [Bioperl-l] Fasta Qual files   Ewan Birney
    • [Bioperl-l] Fasta Qual files   Brian A. Desany, Ph.D.
  • [Bioperl-l] Fasta Qual files   Hilmar Lapp
    • [Bioperl-l] Fasta Qual files   Ewan Birney
      • [Bioperl-l] Fasta Qual files   James Gilbert
      • [Bioperl-l] Fasta Qual files   Brian A. Desany, Ph.D.
• [Bioperl-l] protein identification program for proteomics   Tsvika
  • [Bioperl-l] protein identification program for proteomics   Ewan Birney
    • [Bioperl-l] protein identification program for proteomics   Leonardo Marino-Ramirez
      • [Bioperl-l] protein identification program for proteomics   Peter J Ulintz
  • [Bioperl-l] protein identification program for proteomics   Leonardo Marino-Ramirez
  • [Bioperl-l] protein identification program for proteomics   Aaron J Mackey
• [Bioperl-l] protein identification program for proteomics   Val Curwen
  • [Bioperl-l] protein identification program for proteomics   Peter J Ulintz
• [Bioperl-l] Bio::SeqFeature::FeaturePair, HMMER   Hilmar Lapp
  • [Bioperl-l] Re: Bio::SeqFeature::FeaturePair, HMMER   Ewan Birney
    • [Bioperl-l] Re: Bio::SeqFeature::FeaturePair, HMMER   Hilmar Lapp
      • [Bioperl-l] Re: Bio::SeqFeature::FeaturePair, HMMER   Ewan Birney
• [Bioperl-l] SeqIO::swiss.pm   Hilmar Lapp
  • [Bioperl-l] Re: SeqIO::swiss.pm + "gsequence"   Lorenz Pollak
    • [Bioperl-l] Re: SeqIO::swiss.pm + "gsequence"   Kris Boulez
  • [Bioperl-l] SeqIO::swiss.pm   Ewan Birney
• [Bioperl-l] protein identification program for proteomics   ableasby@hgmp.mrc.ac.uk
• [Bioperl-l] 0.6.2: really, now   Peter van Heusden
• [Bioperl-l] cleaning up headers   James Gilbert
• [Bioperl-l] Displaying sequence with Tk: Advice?   David Block
• [Bioperl-l] Fasta Qual files   hilmar.lapp@pharma.Novartis.com
  • [Bioperl-l] Fasta Qual files   James Gilbert
• [Bioperl-l] Fasta Qual files   hilmar.lapp@pharma.Novartis.com
  • [Bioperl-l] Fasta Qual files   James Gilbert
• [Bioperl-l] 0.6.2: really, now   hilmar.lapp@pharma.Novartis.com
  • [Bioperl-l] 0.6.2: really, now   Peter van Heusden
• [Bioperl-l] Bio::Tools::Blast::HTML questions   Zhao, David [PRI]
• [Bioperl-l] missing Bio::SeqFeatureProducer::MZEF   James Gilbert
  • [Bioperl-l] missing Bio::SeqFeatureProducer::MZEF   Jason Stajich
• [Bioperl-l] Re: missing Bio::SeqFeatureProducer::MZEF   hilmar.lapp@pharma.Novartis.com
  • [Bioperl-l] Re: missing Bio::SeqFeatureProducer::MZEF   James Gilbert
• [Bioperl-l] Possible 0.6.2 code to play with   Peter van Heusden
• [Bioperl-l] Re: SeqIO::swiss.pm + "gsequence"   hilmar.lapp@pharma.Novartis.com
  • [Bioperl-l] Re: SeqIO::swiss.pm + "gsequence"   Kris Boulez
• [Bioperl-l] Re: missing Bio::SeqFeatureProducer::MZEF   hilmar.lapp@pharma.Novartis.com
• [Bioperl-l] Re: SeqIO::swiss.pm + "gsequence"   hilmar.lapp@pharma.Novartis.com
  • [Bioperl-l] Re: SeqIO::swiss.pm + "gsequence"   Kris Boulez
    • [Bioperl-l] Re: SeqIO::swiss.pm + "gsequence"   Kris Boulez
  • [Bioperl-l] Re: SeqIO::swiss.pm + "gsequence"   Ewan Birney
    • [Bioperl-l] Re: SeqIO::swiss.pm + "gsequence"   Hilmar Lapp
• [Bioperl-l] Huh? Bioperl Seq objects and strands   David Block
  • repost - Re: [Bioperl-l] Huh? Bioperl Seq objects and strands   Mark Wilkinson
    • repost - Re: [Bioperl-l] Huh? Bioperl Seq objects and strands   Hilmar Lapp
      • repost - Re: [Bioperl-l] Huh? Bioperl Seq objects and strands   Mark Wilkinson
      • [Bioperl-l] Re: Bioperl Seq objects and strands/GenBank parse   Hilmar Lapp
    • repost - Re: [Bioperl-l] Huh? Bioperl Seq objects and strands   Ewan Birney
      • repost - Re: [Bioperl-l] Huh? Bioperl Seq objects and strands   Peter van Heusden
      • repost - Re: [Bioperl-l] Huh? Bioperl Seq objects and strands   Ewan Birney
      • repost - Re: [Bioperl-l] Huh? Bioperl Seq objects and strands   Arlin Stoltzfus
      • repost - Re: [Bioperl-l] Huh? Bioperl Seq objects and strands   Ewan Birney
      • repost - Re: [Bioperl-l] Huh? Bioperl Seq objects and strands   Mark Wilkinson
• [Bioperl-l] Re: Ensembl Mirror: SRS #!$(#@!!   David Block
• [Bioperl-l] Bio::Tools::Blast::HTML questions   Zhao, David [PRI]
  • [Bioperl-l] Bio::Tools::Blast::HTML questions   J. H. Park
• [Bioperl-l] Bio::Tools::Blast::HTML questions   Andrew Dalke
  • [Bioperl-l] Bio::Tools::Blast::HTML questions   Hilmar Lapp
• [Bioperl-l] Re: SeqIO::swiss.pm   Lorenz Pollak
  • [Bioperl-l] SeqIO::swiss.pm and Annotation::Reference   Hilmar Lapp
    • [Bioperl-l] Re: SeqIO::swiss.pm and Annotation::Reference   Hilmar Lapp
    • [Bioperl-l] SeqIO::swiss.pm and Annotation::Reference   Ewan Birney
      • [Bioperl-l] SeqIO::swiss.pm and Annotation::Reference   Hilmar Lapp
      • [Bioperl-l] SeqIO::swiss.pm and Annotation::Reference   Jeffrey Chang
    • [Bioperl-l] SeqIO::swiss.pm and Annotation::Reference   L.Pollak
• [Bioperl-l] bug fixes; pushing towards candidates off the branch   Ewan Birney
• [Bioperl-l] Placement of LargePrimarySeq   Ewan Birney
  • [Bioperl-l] Placement of LargePrimarySeq   Hilmar Lapp
    • [Bioperl-l] Placement of LargePrimarySeq   Ewan Birney
      • [Bioperl-l] Placement of LargePrimarySeq   Hilmar Lapp
      • [Bioperl-l] Placement of LargePrimarySeq   Ewan Birney
      • [Bioperl-l] Placement of LargePrimarySeq   Paul Gordon
      • [Bioperl-l] Placement of LargePrimarySeq   Jason Stajich
    • [Bioperl-l] Placement of LargePrimarySeq   Todd Richmond
  • [Bioperl-l] Placement of LargePrimarySeq   James Gilbert
    • [Bioperl-l] Placement of LargePrimarySeq   James Gilbert
      • [Bioperl-l] Placement of LargePrimarySeq   David Block
      • [Bioperl-l] Placement of LargePrimarySeq   James Gilbert
      • [Bioperl-l] Placement of LargePrimarySeq   David Block
• [Bioperl-l] ESTScan parser   Hilmar Lapp
• [Bioperl-l] simple problem with 0.6.2-devel tarball   Chris Dagdigian
• [Bioperl-l] 0.6.2-devel tarball fails 'make test' on my lintel system   Chris Dagdigian
• [Bioperl-l] Bio::Tools::Blast::HTML questions   Zhao, David [PRI]
• [Bioperl-l] simple problem with 0.6.2-devel tarball   hilmar.lapp@pharma.Novartis.com
• [Bioperl-l] has XML output made it into NCBI blastall yet?   Chris Dagdigian
• [Bioperl-l] has XML output made it into NCBI blastall yet?   Geer, Lewis (NLM)
• [Bioperl-l] Placement of LargePrimarySeq   hilmar.lapp@pharma.Novartis.com
• [Bioperl-l] sub_species() in Bio::Seq   Hilmar Lapp
• [Bioperl-l] BioPerl branch-06 more modern than head   Peter van Heusden
  • [Bioperl-l] BioPerl branch-06 more modern than head   Ewan Birney
• [Bioperl-l] Storing Large Primary Sequences   David Block
• [Bioperl-l] Indexing GenBank files   Brad Chapman
  • [Bioperl-l] Indexing GenBank files   Mark Dalphin
• [Bioperl-l] AlignIO test sending undefined val errors   Jason Stajich
• [Bioperl-l] Directory Bio/AnnSeqIO   Hilmar Lapp
  • [Bioperl-l] Re: Directory Bio/AnnSeqIO   Ewan Birney
    • [Bioperl-l] Re: Directory Bio/AnnSeqIO   Hilmar Lapp
• [Bioperl-l] DB::GenBank.pm etc. and net entrez queries   chris.dag
  • [Bioperl-l] DB::GenBank.pm etc. and net entrez queries   Hilmar Lapp
  • [Bioperl-l] DB::GenBank.pm etc. and net entrez queries   Ewan Birney
• [Bioperl-l] Bio::Root::IOManager: used?   Hilmar Lapp
  • [Bioperl-l] Re: Bio::Root::IOManager: used?   Ewan Birney
    • [Bioperl-l] Re: Bio::Root::IOManager: used?   Hilmar Lapp
  • [Bioperl-l] Bio::Root::IOManager: used?   gert thijs
• [Bioperl-l] 'standard' URL/HTTP handling   chris dagdigian
  • [Bioperl-l] 'standard' URL/HTTP handling   Ewan Birney
    • [Bioperl-l] 'standard' URL/HTTP handling   Matthew Pocock
    • [Bioperl-l] standard IO & URL handling   Hilmar Lapp
      • [Bioperl-l] Re: standard IO & URL handling   Ewan Birney
      • [Bioperl-l] Re: standard IO & URL handling   gert thijs
• [Bioperl-l] new-person question   Beth Chaplin
  • [Bioperl-l] new-person question   Jason Stajich
  • [Bioperl-l] new-person question   Clay Shirky
• [Bioperl-l] ORF finder   TaNiA
• [Bioperl-l] Candidate 0.6.2 release out.   Ewan Birney
• [Bioperl-l] Feedback from the course we ran   Ewan Birney
  • [Bioperl-l] Feedback from the course we ran   Alessandro Guffanti
    • [Bioperl-l] Feedback from the course we ran   Francis Ouellette
• [Bioperl-l] (no subject)   Bruce Ling
• [Bioperl-l] Is bio-perl right?   John S. J. Anderson
  • [Bioperl-l] Is bio-perl right?   Ewan Birney
    • [Bioperl-l] Is bio-perl right?   Alan Christoffels
      • [Bioperl-l] Is bio-perl right?   Ewan Birney
• [Bioperl-l] Namespace for the DrawableBioSeq?   David Block
  • [Bioperl-l] Namespace for the DrawableBioSeq?   Ewan Birney
  • [Bioperl-l] Namespace for the DrawableBioSeq?   Hilmar Lapp

Last message date: Sat Sep 30 13:09:18 2000
Archived on: Mon Mar 5 18:01:16 2001

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