[Bioperl-l] Bio::Tools::Blast::HTML questions
Zhao, David [PRI]
DZhao1@prius.jnj.com
Fri, 15 Sep 2000 21:11:14 -0400
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It seems that nobody has had the same problem, or you guys think this is
just not significant enough to be answered?
> -----Original Message-----
> From: Zhao, David [PRI] [SMTP:DZhao1@prius.jnj.com]
> Sent: Thursday, September 14, 2000 2:15 PM
> To: 'Bio-Perl'
> Subject: [Bioperl-l] Bio::Tools::Blast::HTML questions
>
> Hi there,
> It seems HTML module doesn't recognize the genbank format below (with
> AU027194.1 instead of AU027194)
>
> dbj|AU027194.1|AU027194 Rattus norvegicus, OTSUKA clone, OT17.21... 52
> 4e-06
> gb|G38038.1|G38038 D11Moh17 P1 (K. Mohlke) Mus musculus STS geno... 50
> 2e-05
> gb|AF167500.1|AF167500 Mus musculus chromosome 10 STS D10Jhu28, ... 48
> 6e-05
> dbj|AU048942.1|AU048942 Rattus norvegicus, OTSUKA clone, 789h12,... 46
> 2e-04
> dbj|AU028307.1|AU028307 Rattus norvegicus, OTSUKA clone, OT27.34... 46
> 2e-04
> gb|G36407.1|G36407 D2Arz6 C57BL/6 YAC library I from Research Ge... 40
> 0.015
> dbj|AU048712.1|AU048712 Rattus norvegicus, OTSUKA clone, 750b02,... 38
> 0.060
> dbj|AU048021.1|AU048021 Rattus norvegicus, OTSUKA clone, 521g08,... 38
> 0.060
>
> Has anybody had the same problem before, or any suggestion?
>
> Thanks,
>
> David
>
>
> David Zhao
>
> Drug Discovery IM&T
> The R.W.Johnson PRI
> 3210 Merryfield Row
> San Diego, CA 92121
> Tel: (858) 784-3184
>
>
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2//EN">
<HTML>
<HEAD>
<META HTTP-EQUIV=3D"Content-Type" CONTENT=3D"text/html; =
charset=3Diso-8859-1">
<META NAME=3D"Generator" CONTENT=3D"MS Exchange Server version =
5.5.2651.75">
<TITLE>RE: [Bioperl-l] Bio::Tools::Blast::HTML questions</TITLE>
</HEAD>
<BODY>
<P><FONT COLOR=3D"#800000" FACE=3D"Verdana">It seems that nobody has =
had the same problem, or you guys think this is just not significant =
enough to be answered?</FONT>
</P>
<P><FONT SIZE=3D1 FACE=3D"Arial">-----Original Message-----</FONT>
<BR><B><FONT SIZE=3D1 FACE=3D"Arial">From: </FONT></B> <FONT =
SIZE=3D1 FACE=3D"Arial">Zhao, David [PRI] =
[SMTP:DZhao1@prius.jnj.com]</FONT>
<BR><B><FONT SIZE=3D1 FACE=3D"Arial">Sent: </FONT></B> <FONT =
SIZE=3D1 FACE=3D"Arial">Thursday, September 14, 2000 2:15 PM</FONT>
<BR><B><FONT SIZE=3D1 =
FACE=3D"Arial">To: </FONT></B> <FONT SIZE=3D1 =
FACE=3D"Arial">'Bio-Perl'</FONT>
<BR><B><FONT SIZE=3D1 =
FACE=3D"Arial">Subject: </FONT>=
</B> <FONT SIZE=3D1 FACE=3D"Arial">[Bioperl-l] Bio::Tools::Blast::HTML =
questions</FONT>
</P>
<P><B><FONT COLOR=3D"#800000" FACE=3D"Verdana">Hi =
there,</FONT></B><FONT FACE=3D"Arial"><BR>
</FONT><B></B><B><FONT COLOR=3D"#800000" FACE=3D"Verdana">It seems HTML =
module doesn't recognize the genbank format below (with</FONT><FONT =
FACE=3D"Arial"></FONT> <FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Courier =
New">AU027194.1</FONT><FONT FACE=3D"Arial"></FONT> <FONT =
COLOR=3D"#800000" FACE=3D"Verdana">instead of=A0</FONT><FONT =
FACE=3D"Arial"></FONT> <FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Courier =
New">AU027194)</FONT></B><FONT FACE=3D"Arial"><BR>
</FONT><B><FONT FACE=3D"Arial">=A0</FONT></B><FONT FACE=3D"Arial"><BR>
</FONT><B></B><B><FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Courier =
New">dbj|AU027194.1|AU027194 Rattus norvegicus, OTSUKA clone, =
OT17.21...=A0=A0=A0 52=A0 4e-06</FONT></B><FONT FACE=3D"Arial"><BR>
</FONT><B></B><B><FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Courier =
New">gb|G38038.1|G38038 D11Moh17 P1 (K. Mohlke) Mus musculus STS =
geno...=A0=A0=A0 50=A0 2e-05</FONT></B><FONT FACE=3D"Arial"><BR>
</FONT><B></B><B><FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Courier =
New">gb|AF167500.1|AF167500 Mus musculus chromosome 10 STS D10Jhu28, =
...=A0=A0=A0 48=A0 6e-05</FONT></B><FONT FACE=3D"Arial"><BR>
</FONT><B></B><B><FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Courier =
New">dbj|AU048942.1|AU048942 Rattus norvegicus, OTSUKA clone, =
789h12,...=A0=A0=A0 46=A0 2e-04</FONT></B><FONT FACE=3D"Arial"><BR>
</FONT><B></B><B><FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Courier =
New">dbj|AU028307.1|AU028307 Rattus norvegicus, OTSUKA clone, =
OT27.34...=A0=A0=A0 46=A0 2e-04</FONT></B><FONT FACE=3D"Arial"><BR>
</FONT><B></B><B><FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Courier =
New">gb|G36407.1|G36407 D2Arz6 C57BL/6 YAC library I from Research =
Ge...=A0=A0=A0 40=A0 0.015</FONT></B><FONT FACE=3D"Arial"><BR>
</FONT><B></B><B><FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Courier =
New">dbj|AU048712.1|AU048712 Rattus norvegicus, OTSUKA clone, =
750b02,...=A0=A0=A0 38=A0 0.060</FONT></B><FONT FACE=3D"Arial"><BR>
</FONT><B></B><B><FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Courier =
New">dbj|AU048021.1|AU048021 Rattus norvegicus, OTSUKA clone, =
521g08,...=A0=A0=A0 38=A0 0.060</FONT></B><FONT FACE=3D"Arial"> </FONT>
</P>
<P><B><FONT COLOR=3D"#800000" FACE=3D"Verdana">Has anybody had the same =
problem before, or any suggestion?</FONT></B><FONT FACE=3D"Arial"> =
</FONT>
</P>
<P><B><FONT COLOR=3D"#800000" FACE=3D"Verdana">Thanks,</FONT></B><FONT =
FACE=3D"Arial"> </FONT>
</P>
<P><B><FONT COLOR=3D"#800000" FACE=3D"Verdana">David</FONT></B><FONT =
FACE=3D"Arial"><BR>
</FONT><B><FONT FACE=3D"Arial">=A0</FONT></B><FONT FACE=3D"Arial"> =
</FONT>
</P>
<UL>
<P><B><FONT COLOR=3D"#000080" FACE=3D"Bookman Old Style">David =
Zhao</FONT></B><FONT FACE=3D"Arial"> </FONT>
</P>
</UL>
<P><B><FONT FACE=3D"Arial">=A0=A0=A0=A0=A0=A0=A0</FONT> <FONT =
COLOR=3D"#000080" FACE=3D"Bookman Old Style">Drug Discovery =
IM&T</FONT></B><FONT FACE=3D"Arial"><BR>
</FONT><B><FONT FACE=3D"Arial">=A0=A0=A0=A0=A0=A0=A0</FONT> <FONT =
COLOR=3D"#000080" FACE=3D"Bookman Old Style">The R.W.Johnson =
PRI</FONT></B><FONT FACE=3D"Arial"><BR>
</FONT><B><FONT FACE=3D"Arial">=A0=A0=A0=A0=A0=A0=A0</FONT> <FONT =
COLOR=3D"#000080" FACE=3D"Bookman Old Style">3210 Merryfield =
Row</FONT></B><FONT FACE=3D"Arial"><BR>
</FONT><B><FONT FACE=3D"Arial">=A0=A0=A0=A0=A0=A0=A0</FONT> <FONT =
COLOR=3D"#000080" FACE=3D"Bookman Old Style">San Diego, CA=A0 =
92121</FONT></B><FONT FACE=3D"Arial"><BR>
</FONT><B></B><B><FONT COLOR=3D"#000080" FACE=3D"Bookman Old Style">=A0 =
=A0=A0=A0=A0=A0 Tel:=A0=A0=A0 (858) 784-3</FONT><FONT COLOR=3D"#000080" =
FACE=3D"Trebuchet MS">184</FONT></B><FONT FACE=3D"Arial"> </FONT>
</P>
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