[Bioperl-l] Is bio-perl right?

[Alan Christoffels]

>           } elsif ( $feat->primary_tag eq 'CDS' ) {
>              # feature is a CDS line without a join statement
>              # yes - this part is potentially badly designed in bioperl!
>              print "start ",$feature->start," end ",$feature->end,"\n";
                              ^^^^^^^^^               ^^^^^^^^              
$feature should be $feat in the example above. This is probably a
typo. The typo fix is probably necessary when you add this script to the
wiki docs.



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        *                                        	  *
	* Alan Christoffels                               *   
	* South African National Bioinformatics Institute *
	* University of Western Cape                      *
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> 
> 
> > So, is bio-perl the Right Thing for this job, or should I look into
> > developing my own stuff?
> > 
> 
> I would hope that Bioperl is "the right thing".
> 
> Give it a whirl and i'd be interested to hear about your experiences. Feel
> free to edit the Wiki docs directly about your experiences as well at
> 
> http://bio.perl.org/wiki/html/BioPerl/FrontPage.html
> 
> (choose perhaps BioperlGettingStarted and then just click "edit page" and
> you are away).
> 
> 
> I will add this mini-script to the wiki docs myself... ;)
> 
> 
> 
> 
> > Thanks for any advice,
> > john.
> > 
> > -- 
> > ------------------------------------------------------------------------
> > John S J Anderson                                           NCBI,NLM,NIH
> > IRTA Fellow                                              Bldg 38A, B2N14  
> > janderso@ncbi.nlm.nih.gov                                   301.594.6087
> > 
> > 
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