[Bioperl-l] Bio::Tools::Blast::HTML question
Zhao, David [PRI]
DZhao1@prius.jnj.com
Wed, 13 Sep 2000 19:48:24 -0400
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I am trying to use bioperl's HTML module to parse my locally run blast
reports. How can I link each hit to NCBI entrez records using GI number?
(something like
http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&
list_uids=07619720&dopt=GenBank) in my output html file? Is this feature
built-in in HTML module, or I have to add links myself?
Please reply to my email address too, since there was some problem with
adding my name to the mailing list.
Thanks in advance
David
> David Zhao
> Drug Discovery IM&T
> The R.W.Johnson PRI
> 3210 Merryfield Row
> San Diego, CA 92121
> Tel: (858) 784-3184
>
>
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Content-Type: text/html
Content-Transfer-Encoding: quoted-printable
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2//EN">
<HTML>
<HEAD>
<META HTTP-EQUIV=3D"Content-Type" CONTENT=3D"text/html; =
charset=3Dus-ascii">
<META NAME=3D"Generator" CONTENT=3D"MS Exchange Server version =
5.5.2651.75">
<TITLE>Bio::Tools::Blast::HTML question</TITLE>
</HEAD>
<BODY>
<P><B><FONT COLOR=3D"#800000" FACE=3D"Verdana">I am trying to use =
bioperl's HTML module to parse my locally run blast reports. How can I =
link each hit to NCBI entrez records using GI number? (something like =
<A =
HREF=3D"http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=3DRetrieve&=
db=3DNucleotide&list_uids=3D07619720&dopt=3DGenBank" =
TARGET=3D"_blank">http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=3D=
Retrieve&db=3DNucleotide&list_uids=3D07619720&dopt=3DGenBank</A>) in my =
output html file? Is this feature built-in in HTML module, or I have to =
add links myself?</FONT></B></P>
<P><B><U><FONT COLOR=3D"#800000" FACE=3D"Verdana">Please reply to my =
email address too</FONT></U><FONT COLOR=3D"#800000" FACE=3D"Verdana">, =
since there was some problem with adding my name to the mailing =
list.</FONT></B>
<BR><B><FONT COLOR=3D"#800000" FACE=3D"Verdana">Thanks in =
advance</FONT></B>
<BR><B><FONT COLOR=3D"#800000" FACE=3D"Verdana">David</FONT></B>
</P>
<BR>
<UL><UL>
<P><B><FONT COLOR=3D"#000080" FACE=3D"Bookman Old Style">David =
Zhao</FONT></B>
</UL></UL>
<P><B> <FONT =
COLOR=3D"#000080" FACE=3D"Bookman Old Style">Drug Discovery =
IM&T</FONT></B>
<BR><B> <FONT =
COLOR=3D"#000080" FACE=3D"Bookman Old Style">The R.W.Johnson =
PRI</FONT></B>
<BR><B> <FONT =
COLOR=3D"#000080" FACE=3D"Bookman Old Style">3210 Merryfield =
Row</FONT></B>
<BR><B> <FONT =
COLOR=3D"#000080" FACE=3D"Bookman Old Style">San Diego, CA =
92121</FONT></B>
<BR><B><FONT COLOR=3D"#000080" FACE=3D"Bookman Old Style"> =
Tel: (858) =
784-3</FONT><FONT COLOR=3D"#000080" FACE=3D"Trebuchet =
MS">184</FONT></B>
</P>
<BR>
</BODY>
</HTML>
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