[Bioperl-l] Bio::Tools::Blast::HTML questions
Zhao, David [PRI]
DZhao1@prius.jnj.com
Thu, 14 Sep 2000 17:15:04 -0400
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Hi there,
It seems HTML module doesn't recognize the genbank format below (with
AU027194.1 instead of AU027194)
dbj|AU027194.1|AU027194 Rattus norvegicus, OTSUKA clone, OT17.21... 52
4e-06
gb|G38038.1|G38038 D11Moh17 P1 (K. Mohlke) Mus musculus STS geno... 50
2e-05
gb|AF167500.1|AF167500 Mus musculus chromosome 10 STS D10Jhu28, ... 48
6e-05
dbj|AU048942.1|AU048942 Rattus norvegicus, OTSUKA clone, 789h12,... 46
2e-04
dbj|AU028307.1|AU028307 Rattus norvegicus, OTSUKA clone, OT27.34... 46
2e-04
gb|G36407.1|G36407 D2Arz6 C57BL/6 YAC library I from Research Ge... 40
0.015
dbj|AU048712.1|AU048712 Rattus norvegicus, OTSUKA clone, 750b02,... 38
0.060
dbj|AU048021.1|AU048021 Rattus norvegicus, OTSUKA clone, 521g08,... 38
0.060
Has anybody had the same problem before, or any suggestion?
Thanks,
David
> David Zhao
> Drug Discovery IM&T
> The R.W.Johnson PRI
> 3210 Merryfield Row
> San Diego, CA 92121
> Tel: (858) 784-3184
>
>
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Content-Type: text/html
Content-Transfer-Encoding: quoted-printable
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2//EN">
<HTML>
<HEAD>
<META HTTP-EQUIV=3D"Content-Type" CONTENT=3D"text/html; =
charset=3DUS-ASCII">
<META NAME=3D"Generator" CONTENT=3D"MS Exchange Server version =
5.5.2651.75">
<TITLE>Bio::Tools::Blast::HTML questions</TITLE>
</HEAD>
<BODY>
<P><B><FONT COLOR=3D"#800000" FACE=3D"Verdana">Hi there,</FONT></B>
<BR><B><FONT COLOR=3D"#800000" FACE=3D"Verdana">It seems HTML module =
doesn't recognize the genbank format below (with</FONT> <FONT =
COLOR=3D"#000000" SIZE=3D2 FACE=3D"Courier New">AU027194.1</FONT> <FONT =
COLOR=3D"#800000" FACE=3D"Verdana">instead of </FONT> <FONT =
COLOR=3D"#000000" SIZE=3D2 FACE=3D"Courier New">AU027194)</FONT></B>
<BR><B><FONT COLOR=3D"#800000" FACE=3D"Verdana"></FONT> </B>
<BR><B><FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Courier =
New">dbj|AU027194.1|AU027194 Rattus norvegicus, OTSUKA clone, =
OT17.21... 52 4e-06</FONT></B>
<BR><B><FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Courier =
New">gb|G38038.1|G38038 D11Moh17 P1 (K. Mohlke) Mus musculus STS =
geno... 50 2e-05</FONT></B>
<BR><B><FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Courier =
New">gb|AF167500.1|AF167500 Mus musculus chromosome 10 STS D10Jhu28, =
... 48 6e-05</FONT></B>
<BR><B><FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Courier =
New">dbj|AU048942.1|AU048942 Rattus norvegicus, OTSUKA clone, =
789h12,... 46 2e-04</FONT></B>
<BR><B><FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Courier =
New">dbj|AU028307.1|AU028307 Rattus norvegicus, OTSUKA clone, =
OT27.34... 46 2e-04</FONT></B>
<BR><B><FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Courier =
New">gb|G36407.1|G36407 D2Arz6 C57BL/6 YAC library I from Research =
Ge... 40 0.015</FONT></B>
<BR><B><FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Courier =
New">dbj|AU048712.1|AU048712 Rattus norvegicus, OTSUKA clone, =
750b02,... 38 0.060</FONT></B>
<BR><B><FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Courier =
New">dbj|AU048021.1|AU048021 Rattus norvegicus, OTSUKA clone, =
521g08,... 38 0.060</FONT></B>
</P>
<P><B><FONT COLOR=3D"#800000" FACE=3D"Verdana">Has anybody had the same =
problem before, or any suggestion?</FONT></B>
</P>
<P><B><FONT COLOR=3D"#800000" FACE=3D"Verdana">Thanks,</FONT></B>
</P>
<P><B><FONT COLOR=3D"#800000" FACE=3D"Verdana">David</FONT></B>
<BR><B><FONT COLOR=3D"#800000" FACE=3D"Verdana"></FONT> </B>
</P>
<UL><UL>
<P><B><FONT COLOR=3D"#000080" FACE=3D"Bookman Old Style">David =
Zhao</FONT></B>
</UL></UL>
<P><B> <FONT =
COLOR=3D"#000080" FACE=3D"Bookman Old Style">Drug Discovery =
IM&T</FONT></B>
<BR><B> <FONT =
COLOR=3D"#000080" FACE=3D"Bookman Old Style">The R.W.Johnson =
PRI</FONT></B>
<BR><B> <FONT =
COLOR=3D"#000080" FACE=3D"Bookman Old Style">3210 Merryfield =
Row</FONT></B>
<BR><B> <FONT =
COLOR=3D"#000080" FACE=3D"Bookman Old Style">San Diego, CA =
92121</FONT></B>
<BR><B><FONT COLOR=3D"#000080" FACE=3D"Bookman Old Style"> =
Tel: (858) =
784-3</FONT><FONT COLOR=3D"#000080" FACE=3D"Trebuchet =
MS">184</FONT></B>
</P>
<BR>
</BODY>
</HTML>
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