[Bioperl-l] protein identification program for proteomics

[Leonardo Marino-Ramirez]

On Thu, 14 Sep 2000, Ewan Birney wrote:

> On Thu, 14 Sep 2000, Tsvika wrote:
> 
> > Hi all,
> > 
> > I am looking for a stand alone protein identification program for
> > proteomics written in Perl to run on my Linux box.  This program will
> > identify proteins based on their molecular weight, and their N-terminal,
> > or C-terminal sequence (a short one that you get from micro sequencing).
> > The program will search flat files of amino acids sequences from the
> > generic databases.
> 
> We don't have this capability in bioperl, though it would be nice (and I
> actually have some neat ideas about how to do it).

Ewan, I think that bioperl should jump into proteomics. Could you comment
more on your ideas about this.

> 
> I think Alan Bleasbly once wrote something like this, so there might be
> something in EMBOSS...
> 
> 
> > 
> > Please your help or advise?
> > 
> > Thanks in advance,
> > 
> > Tsvika.
> > 
> 
> -----------------------------------------------------------------
> Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
> <birney@ebi.ac.uk>. 
> -----------------------------------------------------------------
> 
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