[Bioperl-l] 0.6.2-devel tarball fails 'make test' on my lintel system
Chris Dagdigian
dag@sonsorol.org
Mon, 18 Sep 2000 13:09:51 -0400 (EDT)
Output is appended below....the system I'm using is a PIII 650mhz Dell
laptop running RH6.2. (Kernel 2.2.16-3)
-Chris
=========
[dag@ani bioperl-live]$ make test
PERL_DL_NONLAZY=1 /usr/bin/perl -Iblib/arch -Iblib/lib
-I/usr/lib/perl5/5.00503/i386-linux -I/usr/lib/perl5/5.00503 -e 'use
Test::Harness qw(&runtests $verbose); $verbose=0; runtests @ARGV;' t/*.t
t/Annotation........ok
t/Blast.............ok
t/CodonTable........ok
t/DB................ok
t/HSP...............ok
t/HTML..............ok
t/Index.............ok
t/PrimarySeq........ok
t/Range.............ok
t/RangeI............ok
t/RestrictionEnzyme.ok
t/Sbjct.............ok
t/Seq...............ok
t/SeqAnal...........ok
t/SeqFeature........
-------------------- WARNING --------------------
MSG: Bio::SeqFeature::Generic=HASH(0x825b744) has an attached sequence
which is
not in this annseq. I worry about this
-------------------------------------------------
FAILED tests 18, 20
Failed 2/21 tests, 90.48% okay
t/SeqIO.............
-------------------- EXCEPTION --------------------
MSG: Could not open t/test.embl for EMBL stream reading No such file or
director
y
CONTEXT: Error in uNKNOWN CONTEXT
SCRIPT: t/SeqIO.t
STACK:
Bio::SeqIO::embl::_initialize(143)
Bio::Root::Object::new(462)
Bio::SeqIO::_new(324)
Bio::SeqIO::new(277)
main::t/SeqIO.t(214)
---------------------------------------------------
dubious
Test returned status 255 (wstat 65280, 0xff00)
Undefined subroutine &Test::Harness::WCOREDUMP called at
/usr/lib/perl5/5.00503/
Test/Harness.pm line 288.
make: *** [test_dynamic] Error 255