May 2003 Archives by thread

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Starting: Thu May 1 11:39:25 EST 2003
Ending: Sat May 31 23:44:49 EST 2003
Messages: 267

• [Bioperl-l] A pattern problem in Perl   Peter Wilkinson
• [Bioperl-l] A pattern problem in Perl   darson
• [Bioperl-l] Bio::DB::GenBank->get_Stream_by_query   Josh Lauricha
• [Bioperl-l] An unsolved problem regarding RemoteBlast?   Joao Magalhaes
• [Bioperl-l] problem with Bio::SeqIO->write_seq   Prachi Shah
  • [Bioperl-l] problem with Bio::SeqIO->write_seq   Brian Osborne
  • [Bioperl-l] problem with Bio::SeqIO->write_seq   Jason Stajich
• [Bioperl-l] locuslink.pm questions (for Keith Ching/Hilmar ?)   Andrew Macgregor
• [Bioperl-l] Re: Miller-Myers Algorithm   Yee Man
• [Bioperl-l] Taxonomy and get_taxaid   anthony.underwood at hpa.org.uk
  • [Bioperl-l] Taxonomy and get_taxaid   Heikki Lehvaslaiho
  • [Bioperl-l] Taxonomy and get_taxaid   Heikki Lehvaslaiho
• [Bioperl-l] module   mlobo
  • [Bioperl-l] module   Jason Stajich
• [Bioperl-l] Bioperl and ClustalW/Clustal   Hrishi
  • [Bioperl-l] Bioperl and ClustalW/Clustal   Jason Stajich
• [Bioperl-l] Scale with Bio::Grahics for upstream regions   Joao Magalhaes
  • [Bioperl-l] Scale with Bio::Grahics for upstream regions   Lincoln Stein
• [Bioperl-l] Error running BPbl2seq   BHurwitz at twt.com
• [Bioperl-l] [Fwd: Taxonomy and get_taxaid]   chris dagdigian
• [Bioperl-l] Volunteering   Chris Moy
• [Bioperl-l] Taxonomy and get_taxaid   anthony.underwood at hpa.org.uk
• [Bioperl-l] Bio::DB::Query::GenBank   Josh Lauricha
  • [Bioperl-l] Bio::DB::Query::GenBank   Lincoln Stein
  • [Bioperl-l] Bio::DB::Query::GenBank   Lincoln Stein
• [Bioperl-l] virtual gel from chromatogram, staden library on Windows   Jonathan Epstein
• [Bioperl-l] [offtopic] please delete me --- test to see if bioperl-l list is still dead   Chris Dagdigian
• [Bioperl-l] SeqIO/genbank makes false assumption?   Mark Wilkinson
  • [Bioperl-l] SeqIO/genbank makes false assumption?   Jason Stajich
  • [Bioperl-l] SeqIO/genbank makes false assumption?   Ewan Birney
• [Bioperl-l] misleading error messages...   Alok Saldanha
  • [Bioperl-l] misleading error messages...   Jason Stajich
• [Bioperl-l] module announcement: Bio::OntologyIO::simplehierarchy   Allen Day
• [Bioperl-l] Re: Bioperl-l Digest, Vol 1, Issue 1 (Eric E. Snyder: incommunicado)   Eric Snyder
• [Bioperl-l] Taxonomy and get_taxaid   anthony.underwood at hpa.org.uk
  • [Bioperl-l] Taxonomy and get_taxaid   Jason Stajich
  • [Bioperl-l] Taxonomy and get_taxaid   Jason Stajich
• [Bioperl-l] (repost) virtual gel from chromatogram, staden library on Windows   Jonathan Epstein
  • [Bioperl-l] (repost) virtual gel from chromatogram, staden library on Windows   Remo Sanges
• [Bioperl-l] Bio::Graphics problem   Chris
  • [Bioperl-l] Bio::Graphics problem   Lincoln Stein
• [Bioperl-l] bioperl-l list back from the dead --- sorry for todays mail flood   Chris Dagdigian
• [Bioperl-l] About uninitiated string problem   darson
• [Bioperl-l] bl2seq and disappearing variables   James Wasmuth
  • [Bioperl-l] bl2seq and disappearing variables   Jason Stajich
• [Bioperl-l] bl2seq and disappearing variables   James Wasmuth
• [Bioperl-l] STDOUT write_seq   Guido Dieterich
• [Bioperl-l] STDOUT write_seq   Marc Logghe
• [Bioperl-l] CVS directory delete   Juguang Xiao
  • [Bioperl-l] Re: CVS directory delete   James Stalker
    • [Bioperl-l] Re: CVS directory delete   Juguang Xiao
      • [Bioperl-l] Re: CVS directory delete   James Stalker
• [Bioperl-l] bpindex.pl in sun solaris (sparc)   Soumyadeep nandi
  • [Bioperl-l] bpindex.pl in sun solaris (sparc)   Brian Osborne
• [Bioperl-l] Graphics/Panel problem   Thomas Keller
  • [Bioperl-l] Graphics/Panel problem   Jason Stajich
• [Bioperl-l] Pictogram   Shawn Hoon
• [Bioperl-l] BIOPERL_SAVVY?   Ewan Birney
  • [Bioperl-l] Copying features   Rob Edwards
  • [Bioperl-l] BIOPERL_SAVVY?   Lincoln Stein
  • [Bioperl-l] BIOPERL_SAVVY?   Heikki Lehvaslaiho
    • [Bioperl-l] BIOPERL_SAVVY?   Brian Osborne
      • [Bioperl-l] BIOPERL_SAVVY?   Lincoln Stein
      • [Bioperl-l] BIOPERL_SAVVY?   Jason Stajich
• [Bioperl-l] split-like function   Keith Boroevich
  • [Bioperl-l] split-like function   Rob Edwards
• [Bioperl-l] pfam/swissprot domain info   Douglas Kojetin
• [Bioperl-l] Copying features   Marc Logghe
  • PrimarySeqI.pm patch [was Re: [Bioperl-l] Copying features]   Rob Edwards
    • PrimarySeqI.pm patch [was Re: [Bioperl-l] Copying features]   Heikki Lehvaslaiho
• [Bioperl-l] problem with StandAloneBlast   ying lin
  • [Bioperl-l] problem with StandAloneBlast   James Wasmuth
• [Bioperl-l] Re: pfam/swissprot domain info   Douglas Kojetin
  • [Bioperl-l] Re: pfam/swissprot domain info   Jason Stajich
• [Bioperl-l] directory for bioperl maintenance scripts   Heikki Lehvaslaiho
  • [Bioperl-l] directory for bioperl maintenance scripts   Heikki Lehvaslaiho
    • [Bioperl-l] directory for bioperl maintenance scripts   Ewan Birney
• [Bioperl-l] problem with StandAloneBlast   Qiang Tu
• [Bioperl-l] Reliable working version of Biosql   Zayed Albertyn
• [Bioperl-l] Copying features   Hilmar Lapp
• [Bioperl-l] directory for bioperl maintenance scripts   Hilmar Lapp
• [Bioperl-l] Reliable working version of Biosql   Hilmar Lapp
• [Bioperl-l] Reliable working version of Biosql   Hilmar Lapp
• [Bioperl-l] SearchIO parsing of RPS-BLAST misses last hit within each result?   M L
  • [Bioperl-l] SearchIO parsing of RPS-BLAST misses last hit within each result?   Jason Stajich
    • [Bioperl-l] SearchIO parsing of RPS-BLAST misses last hit within each result?   M L
• [Bioperl-l] tests needed!   Heikki Lehvaslaiho
• [Bioperl-l] Slow restriction digestion   anthony.underwood at hpa.org.uk
  • [Bioperl-l] Slow restriction digestion   Shawn Hoon
  • [Bioperl-l] Slow restriction digestion   Rob Edwards
• [Bioperl-l] Can Bio::Graphics render a muti_segments picture?   tongw
  • [Bioperl-l] Can Bio::Graphics render a muti_segments picture?   Lincoln Stein
    • [Bioperl-l] Can Bio::Graphics render a muti_segments picture?   tongw
      • [Bioperl-l] Can Bio::Graphics render a muti_segments picture?   Lincoln Stein
      • [Bioperl-l] Can Bio::Graphics render a muti_segments picture?   tongw
      • [Bioperl-l] Can Bio::Graphics render a muti_segments picture?   Lincoln Stein
      • [Bioperl-l] Can Bio::Graphics render a muti_segments picture?   tongw
      • [Bioperl-l] Can Bio::Graphics render a muti_segments picture?   Lincoln Stein
      • [Bioperl-l] Can Bio::Graphics render a muti_segments picture?   Lincoln Stein
• [Bioperl-l] Copying features   Marc Logghe
• [Bioperl-l] wuBlast   Josh Lauricha
  • [Bioperl-l] wuBlast   Jason Stajich
• [Bioperl-l] Game XML writer/parser   Eileen Ying Wang
  • [Bioperl-l] Game XML writer/parser   Jason Stajich
• [Bioperl-l] Some problems about Bioperl-sql database structure   Nicolas Rueff
  • [Bioperl-l] Some problems about Bioperl-sql database structure   Hilmar Lapp
• [Bioperl-l] SearchIO parsing of RPS-BLAST misses last hit within each result?   M L
• [Bioperl-l] operating systems and bio-computing   Thomas Keller
  • [Bioperl-l] operating systems and bio-computing   Chris Dagdigian
  • [Bioperl-l] operating systems and bio-computing   Steven Lembark
• [Bioperl-l] operating systems and bio-computing   Mark Dalphin
• [Bioperl-l] tests failing miserably   Hilmar Lapp
  • [Bioperl-l] tests failing miserably   Hilmar Lapp
  • [Bioperl-l] tests failing miserably   Hilmar Lapp
    • [Bioperl-l] tests failing miserably   Hilmar Lapp
    • [Bioperl-l] tests failing miserably   Jason Stajich
    • [Bioperl-l] tests failing miserably   Heikki Lehvaslaiho
  • [Bioperl-l] tests failing miserably   Hilmar Lapp
    • [Bioperl-l] tests failing miserably   Jason Stajich
• [Bioperl-l] Locuslink?? Help   Eric Wang
  • [Bioperl-l] Locuslink?? Help   Hilmar Lapp
    • [Bioperl-l] Locuslink?? Help   Eric Wang
• [Bioperl-l] Factory::GenericObjectFactory   Hilmar Lapp
  • [Bioperl-l] Factory::GenericObjectFactory   Steve Chervitz
    • [Bioperl-l] Factory::GenericObjectFactory   Hilmar Lapp
      • [Bioperl-l] Factory::GenericObjectFactory   Steve Chervitz
• [Bioperl-l] (no subject)   Sally Li
• [Bioperl-l] POD GOD   Jason Stajich
  • [Bioperl-l] Re: POD GOD   Heikki Lehvaslaiho
• [Bioperl-l] tests failing miserably   Hilmar Lapp
  • [Bioperl-l] tests failing miserably   Steve Chervitz
  • [Bioperl-l] tests failing miserably   Jason Stajich
• [Bioperl-l] moving bioperl/biodas website and mailing lists to a new server; possible email delays this weekend   Chris Dagdigian
  • [Bioperl-l] pub.open-bio.org down?   Lincoln Stein
    • [Bioperl-l] Re: pub.open-bio.org down?   Chris Dagdigian
• [Bioperl-l] Locuslink?? Help   Eric Wang
  • [Bioperl-l] Locuslink?? Help   Hilmar Lapp
• [Bioperl-l] Sir Laugh-a-lot   Phone Pranks
• [Bioperl-l] bioperl on MacOS X... a beginner's problems...   Stefanie
  • [Bioperl-l] bioperl on MacOS X... a beginner's problems...   Thomas Keller
    • [Bioperl-l] bioperl on MacOS X... a beginner's problems...   Jason Stajich
  • [Bioperl-l] bioperl on MacOS X... a beginner's problems...   Jason Stajich
  • [Bioperl-l] bioperl on MacOS X... a beginner's problems...   Chris Dagdigian
    • [Bioperl-l] bioperl on MacOS X... a beginner's problems...   Hilmar Lapp
• [Bioperl-l] LocusLink Help   Eric Wang
• [Bioperl-l] Re: should Bio::PrimarySeq be storage-independent after bioperl-db appear?   Hilmar Lapp
  • [Bioperl-l] Re: should Bio::PrimarySeq be storage-independent after bioperl-db appear?   Juguang Xiao
    • [Bioperl-l] Re: should Bio::PrimarySeq be storage-independent after bioperl-db appear?   Hilmar Lapp
• [Bioperl-l] commits coming in   Jason Stajich
• [Bioperl-l] Blast Output   Andreas Bernthaler
  • [Bioperl-l] Blast Output   Leonardo Marino-Ramirez
  • [Bioperl-l] Blast Output   Andreas Kahari
• [Bioperl-l] bioperl-run release 0-0-2 tag   Shawn Hoon
• [Bioperl-l] runnable SYNOPSIS   Heikki Lehvaslaiho
  • [Bioperl-l] runnable SYNOPSIS   Hilmar Lapp
    • [Bioperl-l] runnable SYNOPSIS   Ewan Birney
  • [Bioperl-l] runnable SYNOPSIS + general Analysis client added   Catherine Letondal
• [Bioperl-l] Another update for my alignment module   Yee Man Chan
  • [Bioperl-l] Re: Another update for my alignment module   Ewan Birney
    • [Bioperl-l] Re: Another update for my alignment module   Aaron J Mackey
      • [Bioperl-l] Re: Another update for my alignment module   Yee Man Chan
      • [Bioperl-l] Re: Another update for my alignment module   Aaron J Mackey
      • [Bioperl-l] Re: Another update for my alignment module   Yee Man Chan
      • [Bioperl-l] Re: Another update for my alignment module   Aaron J Mackey
      • [Bioperl-l] Re: Another update for my alignment module   Yee Man Chan
      • [Bioperl-l] Re: Another update for my alignment module   Yee Man Chan
      • [Bioperl-l] Re: Another update for my alignment module   Yee Man Chan
      • [Bioperl-l] Re: Another update for my alignment module   Yee Man Chan
• [Bioperl-l] Root::IO tempfile error   kaboroev at sfu.ca
• [Bioperl-l] Re: Bioperl-l Digest, Vol 1, Issue 25 (Eric E. Snyder: incommunicado)   Eric Snyder
• [Bioperl-l] ISMB/BOSC roll-call -- bioperl speaker needed   Chris Dagdigian
• [Bioperl-l] bioperl and Perl   Jason Stajich
• [Bioperl-l] bioperl and Perl   Line Neil
  • [Bioperl-l] bioperl and Perl   Jason Stajich
  • [Bioperl-l] bioperl and Perl   Bob Freeman
• [Bioperl-l] loading bioSQL schemas   Hilmar Lapp
  • [Bioperl-l] loading bioSQL schemas   Steve Mathias
    • [Bioperl-l] loading bioSQL schemas   Jason Stajich
  • [Bioperl-l] Why is '+' a delimiter in $OBDA_SEARCH_PATH?   Brian Osborne
    • [Bioperl-l] Why is '+' a delimiter in $OBDA_SEARCH_PATH?   Andreas Kahari
      • [Bioperl-l] Why is '+' a delimiter in $OBDA_SEARCH_PATH?   Brian Osborne
      • [Bioperl-l] Why is '+' a delimiter in $OBDA_SEARCH_PATH?   Lincoln Stein
      • [Bioperl-l] Why is '+' a delimiter in $OBDA_SEARCH_PATH?   Brian Osborne
      • [Bioperl-l] Why is '+' a delimiter in $OBDA_SEARCH_PATH?   Lincoln Stein
    • [Bioperl-l] Why is '+' a delimiter in $OBDA_SEARCH_PATH?   Ewan Birney
      • [Bioperl-l] Why is '+' a delimiter in $OBDA_SEARCH_PATH?   Brian Osborne
      • [Bioperl-l] Why is '+' a delimiter in $OBDA_SEARCH_PATH?   Lincoln Stein
• [Bioperl-l] add identifier to Bio::Seq object returned by fetch()   Prachi Shah
  • [Bioperl-l] add identifier to Bio::Seq object returned by fetch()   Jason Stajich
• [Bioperl-l] querying LocusLink   Hilmar Lapp
• [Bioperl-l] loading bioSQL schemas   ulrik plate
• [Bioperl-l] Trying to use Bio::Graphics   Vikas Daga
  • [Bioperl-l] Trying to use Bio::Graphics   Lincoln Stein
    • [Bioperl-l] Trying to use Bio::Graphics   Vikas Daga
    • [Bioperl-l] OBDA/Flat question   Brian Osborne
• [Bioperl-l] Repeat element check   M K. Govind
  • [Bioperl-l] Repeat element check   Brian Osborne
• [Bioperl-l] Why is '+' a delimiter in $OBDA_SEARCH_PATH?   Hilmar Lapp
  • [Bioperl-l] Strand direction in Bl2seq   Julio Fernandez Banet
    • [Bioperl-l] Strand direction in Bl2seq   Jason Stajich
• [Bioperl-l] exonerate (cigar line) to GFF   Charles Hauser
  • [Bioperl-l] exonerate (cigar line) to GFF   Jason Stajich
• [Bioperl-l] BioSQL and Bioperl-db inching towards release   Hilmar Lapp
  • [Bioperl-l] BioSQL and Bioperl-db inching towards release   Allen Day
  • [Bioperl-l] BioSQL and Bioperl-db inching towards release   Jason Stajich
    • [Bioperl-l] BioSQL and Bioperl-db inching towards release   Hilmar Lapp
      • [Bioperl-l] BioSQL and Bioperl-db inching towards release   Jason Stajich
    • [Bioperl-l] BioSQL and Bioperl-db inching towards release   Jason Stajich
• [Bioperl-l] Test DB.t fails   Hilmar Lapp
  • [Bioperl-l] Test DB.t fails   Jason Stajich
• [Bioperl-l] bioperl-db: don't just add exceptions please   Hilmar Lapp
• [Bioperl-l] GlimmerM parser   Jason Stajich
• [Bioperl-l] SearchIO, last hit in blast report dropped   claus vogl
  • [Bioperl-l] SearchIO, last hit in blast report dropped   Jason Stajich
    • [Bioperl-l] SearchIO, last hit in blast report dropped   Hilmar Lapp
      • [Bioperl-l] SearchIO, last hit in blast report dropped   Jason Stajich
• [Bioperl-l] TermI::get_dblinks inconsistent?   Hilmar Lapp
  • [Bioperl-l] Re: ermI::get_dblinks inconsistent?   Michal Kurowski
  • [Bioperl-l] TermI::get_dblinks inconsistent?   Ewan Birney
• [Bioperl-l] Analysis Tests   Shawn Hoon
  • [Bioperl-l] Re: Analysis Tests   Martin Senger
    • [Bioperl-l] Re: Analysis Tests   shawn hoon
• [Bioperl-l] parse cds and peptide from genbank file with identifier   Guoqi4 at aol.com
  • [Bioperl-l] parse cds and peptide from genbank file with identifier   Jason Stajich
• [Bioperl-l] Re: Game XML writer/parser   Sheldon McKay
• [Bioperl-l] tuning load_seqdatabase.db script in bioperl-db   Nicolas Rueff
  • [Bioperl-l] tuning load_seqdatabase.db script in bioperl-db   Ewan Birney
• [Bioperl-l] New feature "Bond"   M K. Govind
  • [Bioperl-l] New feature "Bond"   Jason Stajich
    • [Bioperl-l] New feature "Bond"   Lincoln Stein
• [Bioperl-l] SearchIO, last hit in blast report dropped   Jason Stajich
• [Bioperl-l] Re: Bio::Graphics (circular map)   Lincoln Stein
• [Bioperl-l] tuning load_seqdatabase.db script in bioperl-db   Hilmar Lapp
• [Bioperl-l] New feature "Bond"   Hilmar Lapp
  • [Bioperl-l] New feature "Bond"   Heikki Lehvaslaiho
• [Bioperl-l] tuning load_seqdatabase.db script in bioperl-db   Hilmar Lapp
• [Bioperl-l] Updated Apache disables GBrowse   clangin at siu.edu
• [Bioperl-l] Updated Apache disables GBrowse   clangin at siu.edu
• [Bioperl-l] New feature "Bond"   tex at ix.netcom.com
• [Bioperl-l] avantgo-friendly web page with list archives   Jonathan Epstein
  • [Bioperl-l] avantgo-friendly web page with list archives   Hilmar Lapp
• [Bioperl-l] ontology loader   Hilmar Lapp
• [Bioperl-l] Unsubscribtion   Felipe Faco
• [Bioperl-l] bioperl-db: small change to create() instruction flow   Hilmar Lapp
• [Bioperl-l] Re: [BioSQL-l] How to find by foreign key?   Hilmar Lapp
• [Bioperl-l] Re: [BioSQL-l] Proposal on Bio::DB::BioSQL::MultiDB   Hilmar Lapp
• [Bioperl-l] modules for siRNA design   Donald Jackson
• [Bioperl-l] Unsubscription   Felipe Faco
• [Bioperl-l] first pass at interactive script installation   Lincoln Stein
• [Bioperl-l] TIGR XML IO   Josh Lauricha
• [Bioperl-l] can't remember if I mentioned it...   Ewan Birney
  • [Bioperl-l] can't remember if I mentioned it...   Brian Osborne
• [Bioperl-l] Bio::Structure with CGI!   UT
  • [Bioperl-l] Bio::Structure with CGI!   Heikki Lehvaslaiho
  • [Bioperl-l] Bio::Structure with CGI!   Jason Stajich
• [Bioperl-l] virtual gel from chromatogram, staden library on Windows   Sebastien Letort
• [Bioperl-l] bioperl-run 1.2.0 release   Shawn Hoon
• [Bioperl-l] Changing extent of Bio::Graphics::Panel   Benjamin Berman
  • [Bioperl-l] Changing extent of Bio::Graphics::Panel   Lincoln Stein
• [Bioperl-l] How can I edit a sequence?   Yee Man Chan
• [Bioperl-l] problems by installing bioperl   Karine Prat
• [Bioperl-l] passing multiple databases to blastall   Andrew Nunberg
  • [Bioperl-l] passing multiple databases to blastall   James Wasmuth
• [Bioperl-l] Where to get BLASTCLUST or equivalent?   Cyril C.C. Chua
• [Bioperl-l] One more odd little parsing problem for your list   Michael Muratet
• [Bioperl-l] bioperl-run 1.2.0 tarball available   Shawn Hoon
• [Bioperl-l] Added install methods to makefile   Lincoln Stein

Last message date: Sat May 31 23:44:49 EST 2003
Archived on: Sat May 31 22:44:48 EST 2003

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