[Bioperl-l] Bio::Structure with CGI!

[Heikki Lehvaslaiho]

Lyne,

Read the Bio::Structure::IO docs for comments about using IO::String.
The FAQ has more examples.

	-Heikki

On Thu, 2003-05-29 at 05:26, UT wrote:
> Hello,
> 
> I am stuck with Bioperl's structure module while trying to parse pdb files..
> We have a web interface that allows a client to upload a "pdb" file, it
> looks like Bio::Structure only takes local files. So we have to save the
> uploaded file to the local drive, then process it. It is memory-inefficient
> and can create security holes in our server. Is there a way that I can
> process the pdb file from remote machines without actually saving them into
> the server again? Is Bio::Structure the only module I can use to parse pdb
> files in Bioperl?
> 
> Your help would be appreciated,
> Lyne
> 
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-- 
______ _/      _/_____________________________________________________
      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho    heikki_at_ebi ac uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
   _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
  _/  _/  _/  Cambs. CB10 1SD, United Kingdom
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