[Bioperl-l] Bioperl and ClustalW/Clustal

[Jason Stajich]

no. We have no graphical display of MSAs.  You can use the
$aln->match_line call in SimpleAlign to get the columns which are
conserved (weak and strong) according to the rules in the Clustalw docs.

-jason

On Sat, 3 May 2003, Hrishi wrote:

> Hi All,
>
> Is there any way to use bioperl to color the conserved sites found by
> doing a multiple sequence alignment using Clustalw/Clustal.
>
> Thanks in advance.
>
> Hrishi
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu